Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1327 ATGGGGTCTAGTGGCAGTAAAGCTACTTCTTGTAGTTCATCATCATCATCTTCTTCTTCTTCTTCTTGCAGATTACAAAAGGGTCGATCCAAACGGTATAAAGGTTTTCCTTCTTATTGTCTTGGAACTACTTCTGGATCTCGTGACATTGATAATGATGACCAGGTTTGTGATCAAAATAAAGTAAATGGAAGTGATACCAACAGCAATGATATCGACTCGGATGAAGTAAAATCAGAGTCTTTTAGGAAAGTTAAATCTGATGAAGTACCTTGTATGCCTTCTAACATTGATCTCGATGAGTGGAGTCACACTGAATCCAGAACCGCTAGCAGCTCCGCACATGGTTCTTCAACTCGGTCCACAAACCCTACAAGTCGGTTCGTTTCTCGTTTTAGTCTCATTCCGGGTAATATAAGCTTTAGACTTAGTAGAACCACCAGCTTGGGGTCATCTCGACCTTGTCCTGTTTCATCGGAAGGTCTTTTAATGTTTAGCAATGAAGACGAACTCAGTCTGCATAATAGAAATGAAACTCAGCAATGTAGTGAAGATGCTTCTAATAATTTAAGTTCAAATGCCCCGACATTCGGCTTTGCTGGCAATTTGTCAAGCAGTCCTACGTTGTCTCCTATCCAGGATATTGTTAGAGATGGGTATGCTACACGAGATATGCCTGGCATGAACATGTTTTCTCCTAGAGTTCACAATGAAACGGGGAATGCTGAGACTAGACATATGGATAGACGAAATGGAGCTCGAGAACCTGTTGACCGCAATGTTCGTTTCAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACAGAGTTCACCGCCGATCAGGATTGGCTGACTTCACCTTTTGCCCTCTGCAACAAGAGAGAGAATTGAGAGATGCTAGTGAGGATAGTGGAAGACAAGTAGCGGAGACGGGTACAAGAGTGTCATCTAATCATAATGCTTTAAATTCTAATACTACATCTGGGTATGAGTATCCACTACCGAACATGTCTAACTCCACATTTAGCACCCAAGACTATGAGGCCGAGGCTTCACGGTCAAGAGAAACTAGATATCAGGATCTACTGGTACATAGGTCCAATTTTCTCGAACGGAGAAGAAGAATACGATCTCAGGTTCGTGCTCTACAGCGGTTGGGTAGTCGATTTGAAAATCTTTCTGGACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAACGGTCGTTGTGCATGCAGAATAACTAGTCGCGATAACAATTCAAATTCAAATGATGATACAAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTGGTTTTATCTTCCCGCACTTCTGTATCTTCTATCGGATCTGTTCCCGCACCTGCTGAAGTTGTTGAATCCTTACCTGTGAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCACTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACCGCATGAGAGTACTGCCTTGCCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTATGTCCACTATGTCGGGGGGACATTTGTATATCAGATTCACTGCCAAGAGAGAACTAA 1659 0.4195 MGSSGSKATSCSSSSSSSSSSSCRLQKGRSKRYKGFPSYCLGTTSGSRDIDNDDQVCDQNKVNGSDTNSNDIDSDEVKSESFRKVKSDEVPCMPSNIDLDEWSHTESRTASSSAHGSSTRSTNPTSRFVSRFSLIPGNISFRLSRTTSLGSSRPCPVSSEGLLMFSNEDELSLHNRNETQQCSEDASNNLSSNAPTFGFAGNLSSSPTLSPIQDIVRDGYATRDMPGMNMFSPRVHNETGNAETRHMDRRNGAREPVDRNVRFSRTLSVGRLRDRVHRRSGLADFTFCPLQQERELRDASEDSGRQVAETGTRVSSNHNALNSNTTSGYEYPLPNMSNSTFSTQDYEAEASRSRETRYQDLLVHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRNGRCACRITSRDNNSNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRTSVSSIGSVPAPAEVVESLPVKLYTKLHKHQEEPLQCYICLVEYEDGDRMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICISDSLPREN* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1327 552 CDD mRING-H2-C3H2C2D_ZSWM2 496 539 - -
Tpr2g1327 552 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 552 - -
Tpr2g1327 552 SMART ring_2 497 538 IPR001841 -
Tpr2g1327 552 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Tpr2g1327 552 Pfam Ring finger domain 496 539 IPR001841 -
Tpr2g1327 552 MobiDBLite consensus disorder prediction 71 87 - -
Tpr2g1327 552 MobiDBLite consensus disorder prediction 106 124 - -
Tpr2g1327 552 SUPERFAMILY RING/U-box 476 545 - -
Tpr2g1327 552 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g1327 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 543 IPR013083 -
Tpr2g1327 552 MobiDBLite consensus disorder prediction 1 32 - -
Tpr2g1327 552 MobiDBLite consensus disorder prediction 61 124 - -
Tpr2g1327 552 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 552 - -
Tpr2g1327 552 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1327 Tpr-Chr2 15525829 15530226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1327 49 546 C3H Transcription Factor Family AT5G45290 48.948 1.98e-117 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1327 - - gmx:100815830 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1327 2 15525829 15530226 Tpr2g1327 2 15525829 15530226 ECH
Tpr2g1327 2 15525829 15530226 Tpr4g4433 4 52017458 52021747 PCT