Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1316 ATGCTTTTGTATTTCCCACTCCTAAATATCAAACACCTCTTGCTCCTCAACCAAAAGAAGCCTTATATTTTCTTGTTACCTATGTCTTGGTATGTATACCTTCACCTACTTCACCTTTTTACCTTAACCTTAATTTGGTTTGGTCCAACTAGAACCCTAACAATGGAACTAGGAAACCAAACTGATCATTTGGCTTTGCTCCAATTCAAGCAACTAATATCTAATGATCCATATGGTATCCTAGATTCGTGGAATAGTTCAACTCACTTTTGCAAATGGCATGGAATCATATGCAGTCCAAAGAATCAAAGAGTTACAAAGTTGAAGTTGGATGGATACGTGTTGCATGGATCCATATCTCCATATGTTGGCAATCTCTCGCATTTGAGATTCCTCAACCTTGGAGACAACAACTTCTACGGTAACATTCCACAAGAATTGGGTCGTTTGTCAAGATTAAGGTATGTCCTTCTAGTCAACAACTCGTTGGATGGAGAATTTCCTATAAACTTGACAAAATGCTATGAGCTCAAAACTATGCGCTTAACTGGAAACAAACTGATTGGCAAAATACCTAGACAAATTGGTTCTCTTCAAAAGCTTCAAAAAATTTTTATTGGAGGAAACAATTTATCCGGAAAAATCCCACCATCCATAAGGAATCTGTCATCCCTTACTATGATTTCGGTCGGTTTTAATAACTTGGTGGGAAATATTCCGCAAGAAATGTGCTTCCGAAAACAGTTGAAGTTTATAGCAGTGCATGTCAATAAATTGTCGGAAGGTGAAGTACCGACAGATGGTGTATTTGGAAATGCAACTCAAGTGGCAATTATTGGAAACAATAAGCTTTGTGGTGGTATTTCACAGCTGCATCTACCACCATGCCTTATCAAGGGTAGGAAGCACACAAAACACCATAAATTCGGGTTGATAGCAGTGATTGTTGGTGTGGTTTCTTTTCTTCTCATACTTTCCTTTATTATAACTATGTATTGGATGAGGAAAAGAAATCTAAAACAAAATATTGATTCACCAACAATTGATCAACTAGCTAAGGTTTCATACCAAGAGTTAAATCGAGGAACAGATGGTTTCTCGACTAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTTTACAGGGGAAATCTTGTTTCAGAAGATAATGTTGTTGCTGTGAAGGTCCTTAACCTCCAAAAGAAGGGAGCTCGCAAGAGTTTCTTCATTGAATGTAATGCACTCAAAAACATTAGACACCGAAATTTAGTTAAGGTTTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACCATGGTTGCATCCTGAGATTTTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATCGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAATTGGTCATTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTCGATGAAGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATTTCTGGCAATACCAGTACAATTGGGATCAAAGGGAGTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTGAAGTGTCCATCAGTGGTGACATGTATAGCTTTGGAGTCCTGGTGTTGGAAATGCTTACCGGGAGAAGACCCACTGATGAAATTTTCAAAGATGGTCAAAATCTGCATAACTTGGTTGCAATTTCATTTCCTGATAATCTTGGAAATATTTGTAACCCACATCTGGTATCAAGAGATGCAGAAGTGGCAGAAGATGGACACAATGCAAATCTGATTCCAACTATTGAAGAGTGCTTAGTTTCACTTTTTAGGATTGGACTTATTTGTTCAATGGAATCACCGAAGGAAAGAATGAATATTGTGGATGTCACTAGAGAGCTTAACATAATCAGAAAGACCTTTCTCGCTGGTTTTCGCAGTCATAATTAG 2028 0.3787 MLLYFPLLNIKHLLLLNQKKPYIFLLPMSWYVYLHLLHLFTLTLIWFGPTRTLTMELGNQTDHLALLQFKQLISNDPYGILDSWNSSTHFCKWHGIICSPKNQRVTKLKLDGYVLHGSISPYVGNLSHLRFLNLGDNNFYGNIPQELGRLSRLRYVLLVNNSLDGEFPINLTKCYELKTMRLTGNKLIGKIPRQIGSLQKLQKIFIGGNNLSGKIPPSIRNLSSLTMISVGFNNLVGNIPQEMCFRKQLKFIAVHVNKLSEGEVPTDGVFGNATQVAIIGNNKLCGGISQLHLPPCLIKGRKHTKHHKFGLIAVIVGVVSFLLILSFIITMYWMRKRNLKQNIDSPTIDQLAKVSYQELNRGTDGFSTRNLIGSGSFGSVYRGNLVSEDNVVAVKVLNLQKKGARKSFFIECNALKNIRHRNLVKVLTCCSSTDYKGQEFKALVFDYMKNGSLEPWLHPEILNAEPPTTLDLSHRLNIIIDVASALHYLHHECEQLVIHCDLKPSNVLLDEDMVAHVSDFGIARLVSTISGNTSTIGIKGSVGYAPPEYGMGSEVSISGDMYSFGVLVLEMLTGRRPTDEIFKDGQNLHNLVAISFPDNLGNICNPHLVSRDAEVAEDGHNANLIPTIEECLVSLFRIGLICSMESPKERMNIVDVTRELNIIRKTFLAGFRSHN* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1316 675 Pfam Leucine rich repeat N-terminal domain 60 99 IPR013210 -
Tpr2g1316 675 Pfam Protein kinase domain 368 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g1316 675 Coils Coil 674 675 - -
Tpr2g1316 675 Gene3D Phosphorylase Kinase; domain 1 347 447 - -
Tpr2g1316 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Tpr2g1316 675 ProSiteProfiles Protein kinase domain profile. 366 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr2g1316 675 SUPERFAMILY Protein kinase-like (PK-like) 342 660 IPR011009 -
Tpr2g1316 675 ProSitePatterns Protein kinases ATP-binding region signature. 372 395 IPR017441 GO:0005524
Tpr2g1316 675 Gene3D Ribonuclease Inhibitor 57 301 IPR032675 -
Tpr2g1316 675 PANTHER OS04G0122200 PROTEIN 261 670 - -
Tpr2g1316 675 PANTHER OS04G0122200 PROTEIN 47 260 - -
Tpr2g1316 675 SUPERFAMILY L domain-like 60 287 - -
Tpr2g1316 675 Gene3D Transferase(Phosphotransferase) domain 1 448 669 - -
Tpr2g1316 675 PANTHER LRR RECEPTOR-LIKE KINASE 47 260 - -
Tpr2g1316 675 PANTHER LRR RECEPTOR-LIKE KINASE 261 670 - -
Tpr2g1316 675 SMART serkin_6 366 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1316 Tpr-Chr2 15443177 15447281 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1316 115 673 Receptor kinase-like Gene Family AT3G47570 41.876 7.03e-155 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tpr2g1316 Pkinase 4.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1316 - - mtr:MTR_5g025930 749.199