LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g1307	ATGAAGCCTTTTTGTATACTTTTGTGCCTATACCTTCATCTTCTTTTTATGTTTACCCTGAATTTAATGTGGTTTGGTCCAAATCCAAACAAAATTGTGGTAGAGGCATTAGGAAACCAAACAGATCATTTGGCATTGCTCAAATTCAAAGAATTAATATCCAATGATCCAAACAGAGTCTTAAATTCATGGAATTCTTCCGTCCACTTTTGTAAGTGGCATGGAGTCACATGCAACCCCATGCATCAAAGAGTTATAAAGTTGAACTTAGAAGGATATGAGTTACATGGATCCTTATCTCCTTATGTTGCCAATCTCACTTTTCTAATAAAGCTCAACCTTATGAACAACAGTTTCTTTAGAGAAATCCCACCAGAACTAGGTCAATTGCTACAATTGCAACAACTTCATCTCGTCGGTAATTTGTTTTCCGGTGAAATTCCTACAAACTTGACATATTGCTTCAATCTTAAAAGCTTGCTTTTGGGATCGAACAAGCTAATTGGCAAAATACCAACTGAAATTGGCTCTTTGAAAAAGCTTCAATATGTCGAAATTTGGAAAAACAATTTAACCGGAGAATTTCCTTCGTCTATAGGTAATCTTTCATCCTTAATGATTTTTTCTTTTACTTATAACAACATAGAAGGAAATATTCCACAAGAAATATGTCGCCTCAAAAACATGACATTTTTAACTATGGGTAACAACAATTTGTCTGGTATAATTCCTTCATGTCTTTTCAATATGTCATCACTTTCTACGCTCTCAATATCAACCAATAACTTTCATGGTTCTCTTCCACCAAACATGTTTCACACCCTCCCCAATCTTCAAGCTCTTGCATTTGGCATGAATATAATCTCTGGCCCAATTCCAACTTCCATTATAAATGCATCTTCTTCTCTTGCATTATTTGATTTCGGTTCAAATTATTTTGTCGGACAAGTTCCAACTTTAGGAATACTAAAAGATTTAAATATTTTGAATTTGGAAAACAACAACTTAGGTGACAATTCAACAAATGATTTGGATTTTTTAAAATCTTTGACAAACTGTAGTAAGTTGTATTTTCTTTCCATTAGACTTAATAATTTTGGAGGCATGCTACCAAGTTCTATAGGAAACTTATCCACCAAGCTTAATATACTAATTCTTGGATCTAATCAGATATCAGGAAAAATTCCTCCAGAATTAGGACATTTAGTTGGCTTAACTTTATTGAACATGGAATTGAACCACTTTGATGGAATTATTCCAACTACTTTTAAGATGTTTCAAAATATGCAAAAGTTAATAATGGGTGAAAACAAGTTGTTAGGAGATATACCACCCTTTATAGGCAATCTCAGTCAATTGTATTATTTGGATTTACAGCATAATATATTTGAAGGAAATATTCCTCCAAGCATAGGAAACTGCCAAAAGTTACAATATCTAGATTTTTCGCAGAATAAGCTTAGAGGAACCATACCTTTAGAGGTTTTTAATCTTGTTTCTTTAACCAACCTCTTGAACTTGTCACATAACTCTTTGAGTGGTAGCTTACCAAGAGAAGTCGGTTTGCTAAAAAATATAAACTGGCTAGATATATCTGAGAATCATTTGTCTGGAAATATTCCTGAAACTATTGGTGAATGCATAAGCTTAGAGTACCTCAATTTACAAGGGAACTCCTTCAACGGAACAATACCATCCTCTTTGGCTTCTCACAAAGGTCTGCGACATTTAGATCTGTCAAGAAATCAATTCTATGGACCAATTCCTGATGCTATGCAAAACATCTCTAGCTTAGAATACTTGAATGTATCTTTCAACATGTTGGAAGGTGAGGTGCCGATATATGGTGTATTTGGAAATGCAACACAAGTAGAAATTATTGGAAACAATAAGCTTTGTGGAGGTATTGCACAACTGCATCTACCACCATGCCATATCAAGGGCACAAAACACCATAAATTCAGGTTGATAATAGTGATAGTTAGCGTGGTTTCTTTCCTTCTCATTCTTTCATTTATTATAACCATCTATTGGATGAGGAAAAGAAATCAAAAACGATCTTTTGATTCACCACCAATCGATCAACTAACTAAGGTTTCATATCAAGCCTTACATCGAGGAACCGATGGGTTCTCGACAAGAAACTTGATAGGCTCAGGAAGTTTTGGTTCTGTGTACCTAGGAAATCTTGTGTCAGAAGATAATCTTGTTGCTGTAAAGGTCTTGAACCTACAAAAACAGGGAGCTCACAAGAGTTTTATTGTTGAATGTAATGCACTCAAAAATATTAGGCACCGAAATTTAGTTAAGATCTTAACATGTTGTTCGAGTACAGATTACAAAGGCCAAGAATTTAAAGCTTTAGTTTTTGATTACATGAAAAATGGAAGCTTAGAACAATGGTTGCATCCTGAGATTTTAAATGCAGAGCCTCCAACAACATTGGACCTCAGTCATAGATTAAACATCATTATTGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAGTTGGTTCTTCACTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTATCTCGGTCATTGGTGATACTTCTCATAAAGATACTACTAGTACAATTGGAATAAAAGGGACAATTGGTTATGCTCCACCTGAGTATGCATTGGGTTCAGAAGTGTCCACATTTGGTGACATGTATAGCTTTGGAGTCCTTATGTTGGAAATGCTTACCGGTAGAAGACCCACTGACGAAGTTTATGGAGATGGTCAAAATCTGCATAACTTTGTTGCAAATTCATTTCCCGATAATCTTATAAAGATTTTGGACCCGCATCTTTTGTCAAGAGATGGAGAAGTAGCAATGGAAGATCAAAACCGTGAGAATCTTATTCCACTTTTGTCAAGAGAGGAGTGCTTAGTTTCACTTTTTAGGATTGGACTTATTTGTTCATTGGAATCACCTAAAGAAAGAATGAATATTGCATATGTCACTAGAGAGCTTAGCATAATCAAAAAGGCTTTCTTCTCCGGTGTTCGCAGTCATAATTAG	3087	0.3515	MKPFCILLCLYLHLLFMFTLNLMWFGPNPNKIVVEALGNQTDHLALLKFKELISNDPNRVLNSWNSSVHFCKWHGVTCNPMHQRVIKLNLEGYELHGSLSPYVANLTFLIKLNLMNNSFFREIPPELGQLLQLQQLHLVGNLFSGEIPTNLTYCFNLKSLLLGSNKLIGKIPTEIGSLKKLQYVEIWKNNLTGEFPSSIGNLSSLMIFSFTYNNIEGNIPQEICRLKNMTFLTMGNNNLSGIIPSCLFNMSSLSTLSISTNNFHGSLPPNMFHTLPNLQALAFGMNIISGPIPTSIINASSSLALFDFGSNYFVGQVPTLGILKDLNILNLENNNLGDNSTNDLDFLKSLTNCSKLYFLSIRLNNFGGMLPSSIGNLSTKLNILILGSNQISGKIPPELGHLVGLTLLNMELNHFDGIIPTTFKMFQNMQKLIMGENKLLGDIPPFIGNLSQLYYLDLQHNIFEGNIPPSIGNCQKLQYLDFSQNKLRGTIPLEVFNLVSLTNLLNLSHNSLSGSLPREVGLLKNINWLDISENHLSGNIPETIGECISLEYLNLQGNSFNGTIPSSLASHKGLRHLDLSRNQFYGPIPDAMQNISSLEYLNVSFNMLEGEVPIYGVFGNATQVEIIGNNKLCGGIAQLHLPPCHIKGTKHHKFRLIIVIVSVVSFLLILSFIITIYWMRKRNQKRSFDSPPIDQLTKVSYQALHRGTDGFSTRNLIGSGSFGSVYLGNLVSEDNLVAVKVLNLQKQGAHKSFIVECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFDYMKNGSLEQWLHPEILNAEPPTTLDLSHRLNIIIDVASALHYLHHECEQLVLHCDLKPSNVLLDDDMVAHVSDFGIARLISVIGDTSHKDTTSTIGIKGTIGYAPPEYALGSEVSTFGDMYSFGVLMLEMLTGRRPTDEVYGDGQNLHNFVANSFPDNLIKILDPHLLSRDGEVAMEDQNRENLIPLLSREECLVSLFRIGLICSLESPKERMNIAYVTRELSIIKKAFFSGVRSHN*	1029

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g1307	1028	Gene3D	Phosphorylase Kinase; domain 1	693	792	-	-
	Tpr2g1307	1028	Pfam	Protein kinase domain	713	940	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g1307	1028	SUPERFAMILY	Protein kinase-like (PK-like)	686	1013	IPR011009	-
	Tpr2g1307	1028	Gene3D	Ribonuclease Inhibitor	167	273	IPR032675	-
	Tpr2g1307	1028	ProSitePatterns	Protein kinases ATP-binding region signature.	717	740	IPR017441	GO:0005524
	Tpr2g1307	1028	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	842	854	IPR008271	GO:0004672\|GO:0006468
	Tpr2g1307	1028	Pfam	Leucine rich repeat	549	608	IPR001611	GO:0005515
	Tpr2g1307	1028	Pfam	Leucine rich repeat	180	239	IPR001611	GO:0005515
	Tpr2g1307	1028	Gene3D	Transferase(Phosphotransferase) domain 1	793	1022	-	-
	Tpr2g1307	1028	Gene3D	Ribonuclease Inhibitor	339	653	IPR032675	-
	Tpr2g1307	1028	PANTHER	LRR RECEPTOR-LIKE KINASE	27	1023	-	-
	Tpr2g1307	1028	ProSiteProfiles	Protein kinase domain profile.	711	985	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g1307	1028	SMART	serkin_6	711	1021	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tpr2g1307	1028	Gene3D	Ribonuclease Inhibitor	41	155	IPR032675	-
	Tpr2g1307	1028	PANTHER	OS04G0122200 PROTEIN	27	1023	-	-
	Tpr2g1307	1028	SUPERFAMILY	L domain-like	380	634	-	-
	Tpr2g1307	1028	Pfam	Leucine rich repeat N-terminal domain	40	79	IPR013210	-
	Tpr2g1307	1028	SUPERFAMILY	L domain-like	40	336	-	-
	Tpr2g1307	1028	Gene3D	Ribonuclease Inhibitor	274	338	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g1307	Tpr-Chr2	15291681	15295590	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g1307	39	1026	Receptor kinase-like Gene Family	AT3G47570	45.055	0.0	832

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Tpr2g1307		Pkinase	1.6e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g1307	-		-	mtr:MTR_5g025930	1333.93