Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1243 ATGGCCGCCACCGCCGCAGCACGTCCCCTTGTCACTATCCAAACCCTAGAAGGTGACATGGCCACCGATTCACCATCAACCCTCCCCATTCCCGATGTCATGCGAGCTTCAATTCGTCCCGATATCGTCAACTTCGTCCATTCCAACATCTCCAAAAATTCCCGTCAACCCTACGCCGTCAGCCGTCGCGCCGGTTATCAAACCTCCGCCGAATCATGGGGAACTGGTCGTGCTGTTTCCCGTATCCCTCGTGTTCCTGGTGGCGGAACCCACCGTGCCGGACAAGCTGCATTCGGAAACATGTGTCGCGGTGGTGGAATGTTCGCTCCGACTAGGATCTGGCGAAAATGGCACCGGAAAATTAACGTGAACCAGAAACGTTACGCTGTTGTTTCCGCCATTGCTGCTTCCGCGGTACCTTCCCTTGTTCTTGCTCGTGGTCATCGGGTCGAGAATGTTCCTGAGTTTCCTCTCGTTGTTGGTGATTCTGCTGAAGGAGTTGAGAAAACTAAAGAAGCTATCAAAGTTTTGAAGACGATCGGAGCTTTTCCGGATGCTGAGAAAGCGAAAGATAGCCATGGAATTCGTCCTGGGAAGGGGAAAATGCGTAACCGGAGATACATTTCGCGAAAGGGACCGCTTATTGTTTATGGTACCGAAGGTGCGAAAGCTGTGAAGGCTTTCAGGAACATTCCTGGTGTGGAGATTACTAATGTGGAGAGATTGAATTTATTGAAACTTGCACCTGGTGGACATTTGGGTAGGTTTGTGGTTTGGACGAAATCGGCATTTGAGAAATTGGATTCGATTTATGGGTCATTTGAGAAAGCTTCTGAGAAGAAGAAGGGTTATGTTCTTCCTAGGGCTAAGATGGTGAACTCTGATTTGACTAGGATTATTAATTCTGATGAAGTTCAATCTGTTGTGAGGCCGATTAAGAAGGATGTTAAGCGTCCATCGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTCGGCTTAATCCTTATGCTAAGACTGCTAAGAGAATGGCTTTACTTGCTGAGGCTGAGCGGGTTAAAGCTAAGAAGGAGAAGCTTGAAAAGAAGAGGAAGACTGTTTCCAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGGAAAGCTTGGTACAACACCATGGTCTCAGACTCTGATTATACTGAATTTGACAACTTCTCTAAGTGGTTGGGTGTTTCACAGTGA 1224 0.4755 MAATAAARPLVTIQTLEGDMATDSPSTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRRAGYQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGGMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRVENVPEFPLVVGDSAEGVEKTKEAIKVLKTIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFEKASEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPIKKDVKRPSLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLEKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1243 407 PANTHER BNAC03G35890D PROTEIN 3 407 - -
Tpr2g1243 407 PANTHER 60S RIBOSOMAL PROTEIN L4 3 407 IPR045240 -
Tpr2g1243 407 ProSitePatterns Ribosomal protein L1e signature. 122 148 IPR013000 -
Tpr2g1243 407 Gene3D - 5 310 IPR023574 GO:0003735|GO:0005840|GO:0006412
Tpr2g1243 407 SUPERFAMILY Ribosomal protein L4 15 269 IPR023574 GO:0003735|GO:0005840|GO:0006412
Tpr2g1243 407 Coils Coil 344 374 - -
Tpr2g1243 407 Pfam 60S ribosomal protein L4 C-terminal domain 282 354 IPR025755 -
Tpr2g1243 407 Pfam Ribosomal protein L4/L1 family 30 268 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1243 Tpr-Chr2 14575913 14578809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1243 3 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.963 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1243 K02930 - gmx:100779764 697.197