Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1235 ATGAGTGATACAAAAGAAAAGGAAGAAGCTGTCGAGGGCGTTCCCGCAGCTGTTAGTGTGGAGGAAGCTGGGCATGTTGTTGAAAATGAAAGTTCAAACCAAGTTTCAACTAGTCCACAATTAAGAGATGATGATATGATGATTATTGATAATCTTGCTGGTTTGGATTCGTACCTTGATCAAGAGATGCATCTTGAAGTTCAACCTGTTGTTGTAGAGGAACCTTCGATGAATGTTGAGAATGTGTTGAATGATGTTAAAATTGGGAAGGCGGAGTTAGCTGCCGAGGATGAAAACGTGAAACCAAAAGTTGTTGCAGAAGATATTTTAAAAGAAAATATTCAGGATACCCTTCACTCTGTCCCGGTTGAGGATGATACTCAAATTTTGATTACAACTGAGGGTGAAGATACTTCGGATGTGAAGGTGGATGCCGAGAAAATTCTTCAGAGTGATAATGGCGTTGAGAATGATGATACTGCATGTCAAAATGGTGATGCTGATGCTGAAACGACAGCGGTGGAGGTTGAGGTGAAGCCTGGAGTTTGTGAAGCGGCTGATGGTAAAACTTGTGATAATGAACCTATATCGTCAAGTCATAACAATCCTACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCACAACGATCCTATTGCACCACAACCTCCCCCTGCTGATGTAATGCCAGAAAGCAAGAATGTTTTAGAAGATGAAAGTAAGGCCGGTGAAGAGCAAGCTGCTGAGCCTGCAGATAACGGGGTCCTGGATTCGCCGCAGAACATGTATTTCTTGGATCCTGATCATTATTATGATGGTAATGAGCCGGGAACGGAAGAGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGGGCATGGACTTCAAACCTCCCAAATTTTACGGAGAAACACTTAATTGCCTTAAGTTATGGAGATCAGTGATCAGATTGGGAGGCTATGAAAAGGTAACCTCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCAAAACATAAAAGGTGGTGAGATGAATGTGCCTATCGCTTCTCCTCCAGAGCCTGCGAATGTTGAAAATCAGGCTATAGCATCAGGTAGAGCCCGGAGATATGCTGCTGAGCAGGCTATGCGGGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTTAGTGACCCTATTATAAAGGATCGGAATTCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTGAAGAGCATCAATATACTTAAACGTAAGAAACCATCTTATGTGGATAACGCAGTCAAAGCAGCACGCAGTAAACCATCAAGACCACAGTTGGAAACATCTGTGGATGACATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTCGAGATATATGCTTTAGTTCCTGGCCTTCTACGGGAAGAGGTCCGTGTCCAATCAGACCCTGCGGGACGTTTGGTCATAAGTGGTGAGCCAGAGCATCCCAATAATCCTTGGGGTGTTACACCATTCAAAAAGGTTGTGAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGCTGCATGGACAATTGTTTGTTCGTGTTCCATTTGAACAGTCAGAATAG 1740 0.4374 MSDTKEKEEAVEGVPAAVSVEEAGHVVENESSNQVSTSPQLRDDDMMIIDNLAGLDSYLDQEMHLEVQPVVVEEPSMNVENVLNDVKIGKAELAAEDENVKPKVVAEDILKENIQDTLHSVPVEDDTQILITTEGEDTSDVKVDAEKILQSDNGVENDDTACQNGDADAETTAVEVEVKPGVCEAADGKTCDNEPISSSHNNPTTPQPDPSDTNEPIPSSHNDPIAPQPPPADVMPESKNVLEDESKAGEEQAAEPADNGVLDSPQNMYFLDPDHYYDGNEPGTEEDQAAFMKELENFFRERGMDFKPPKFYGETLNCLKLWRSVIRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERQNIKGGEMNVPIASPPEPANVENQAIASGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNSVSVQKREKQLKSINILKRKKPSYVDNAVKAARSKPSRPQLETSVDDIGPPADWVKVNVQKTKDCFEIYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1235 579 Gene3D - 285 383 IPR036431 GO:0003677
Tpr2g1235 579 MobiDBLite consensus disorder prediction 26 41 - -
Tpr2g1235 579 SMART ARID_2 282 372 - -
Tpr2g1235 579 MobiDBLite consensus disorder prediction 1 42 - -
Tpr2g1235 579 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 88 578 IPR045147 GO:0006357
Tpr2g1235 579 SUPERFAMILY HSP20-like chaperones 489 575 IPR008978 -
Tpr2g1235 579 ProSiteProfiles ARID domain profile. 285 376 IPR001606 GO:0003677
Tpr2g1235 579 Gene3D - 477 579 IPR008978 -
Tpr2g1235 579 CDD ACD_sHsps_p23-like 498 574 - -
Tpr2g1235 579 Pfam Hsp20/alpha crystallin family 496 578 IPR002068 -
Tpr2g1235 579 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 88 578 - -
Tpr2g1235 579 MobiDBLite consensus disorder prediction 241 263 - -
Tpr2g1235 579 MobiDBLite consensus disorder prediction 192 218 - -
Tpr2g1235 579 CDD ARID 287 372 - -
Tpr2g1235 579 Pfam ARID/BRIGHT DNA binding domain 288 372 IPR001606 GO:0003677
Tpr2g1235 579 SUPERFAMILY ARID-like 277 386 IPR036431 GO:0003677
Tpr2g1235 579 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 479 579 IPR002068 -
Tpr2g1235 579 SMART bright_3 286 377 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1235 Tpr-Chr2 14474029 14481634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1235 280 577 ARID Transcription Factor Family AT1G76510 61.716 5.57e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tpr2g1235 HSP20 2.5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1235 - - cam:101506818 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1235 2 14474029 14481634 Tpr2g1235 2 14474029 14481634 ECH