Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1225 ATGACACGAGCGTTAAGAATTCTCAATTCCACGGCAAATATCACCACCGTCGCAGTTGTAGCGCCACCACCAGAAGCAGTAGCTTTAGAATCAGATTTCGTGGTGATTCTAGCAGCTTTACTCTGCGCTTTGATATGCGTCGTTGGACTAATCGCCGTCGCTCGTTGTGCCTGGCTCCGACGAGACTCCGGCGCCGGAAATTCACCTCAACAAGCTCTAGCTAACAAAGGACTGAAAAAGAAAGTTCTTCAATCACTTCCGAAATTCGCTTACGTCGACAGCAACCCTGGAAAATGGCTAGCAACAACAGAATGCGCGATTTGCTTATCGGATTTCGCCGCCGGCGACGAGATCCGTGTTTTACCGCAGTGTGGACATGGATTCCACGTAGCGTGCATCGACACATGGCTTGGATCACACTCTTCTTGCCCTTCCTGTAGACAGATTCTGGCTGTAACAAGGTGTCAGAAGTGCGGCAGGTTTCCGGCGAACGGAGCTGAAACTACCGCTACCGGCGTTGCGGTGAGTGAACCGGAGTTGAAATCTTTAGAAGAAGGCAATGTCGGTGCAAATAGTAATAATCATTGTAATGGGGGTGTTAGTAGTAGTAGTAATAACAGTGGGTTCTTGCCTTAA 636 0.4906 MTRALRILNSTANITTVAVVAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRDSGAGNSPQQALANKGLKKKVLQSLPKFAYVDSNPGKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPANGAETTATGVAVSEPELKSLEEGNVGANSNNHCNGGVSSSSNNSGFLP* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1225 211 Pfam Ring finger domain 104 147 IPR001841 -
Tpr2g1225 211 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Tpr2g1225 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 182 - -
Tpr2g1225 211 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 182 - -
Tpr2g1225 211 CDD RING-H2_PA-TM-RING 104 147 - -
Tpr2g1225 211 SMART ring_2 105 146 IPR001841 -
Tpr2g1225 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Tpr2g1225 211 SUPERFAMILY RING/U-box 83 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1225 Tpr-Chr2 14318208 14319504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1225 1 158 C3H Transcription Factor Family AT1G76410 64.024 7.64e-65 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1225 - - gmx:100787383 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1225 2 14318208 14319504 Tpr4g4398 4 51362086 51363116 PCT