Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1196 ATGGACAAAAACGTTTCTAACAACTCAGCTACAACCAACAACAACCCATCACCACCCAATACCCCGCCACACACCCCCAATGAAACAAACCCTAGGCCTAACGTCGAGGGTTTGGAAACAATTGCCAAAACCTCTGAAGAGGTTTTGGCAGAATTGAACATCGTCAGTGATGAGGAGATCAGTAATGAAAATGGTGATGGTGGCGCTAACGAAGATGGTGGGGCTGAAGGTGTTGTTCCTAGGGTTATGGTTTGTGCTTTGACTGCGAATGTTTCGAATACGTCTGTGGTCGAGCAAGTTGGTGGAGATGGTCATGTCCAACCTTTTAAGAAGAGAAAGTACAATTCAATTAGAGACCCTCCGGCTGGAAAACCTACTTGTCCGGAATGTAAGAGGGAGTTTGCATCATGGAGGGCTGCTTTCGGGCATATGCGCAAGCATCCCGAGCGTCCGCACCGTGGATTCTTTCCTCCTCCTACTTTTACCCCTACTGCACCAGTGGCTGGGATCCATGATGGTCGTCCTAAGAAGGTGGATGACCGAATGTTAACACGGGTTCGAGAACTTGTGATTGATCTAAATAGATCTATAGGAGTGTCAGCCGAGTCCTCTGGCGCTGGTGGCAGTGGTGGGAGAGGGAGAGATGAAGAAGCACCTGTCCCGACGCATGAAAATGAAGAGGGCAGTAGAAAAAATGTGTTTGACTTGAATGAATTGCCGCCCAGTGATGATGATGATGAGGAACCTGAAGATAAATGA 759 0.4809 MDKNVSNNSATTNNNPSPPNTPPHTPNETNPRPNVEGLETIAKTSEEVLAELNIVSDEEISNENGDGGANEDGGAEGVVPRVMVCALTANVSNTSVVEQVGGDGHVQPFKKRKYNSIRDPPAGKPTCPECKREFASWRAAFGHMRKHPERPHRGFFPPPTFTPTAPVAGIHDGRPKKVDDRMLTRVRELVIDLNRSIGVSAESSGAGGSGGRGRDEEAPVPTHENEEGSRKNVFDLNELPPSDDDDEEPEDK* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1196 252 MobiDBLite consensus disorder prediction 199 252 - -
Tpr2g1196 252 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Tpr2g1196 252 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 96 250 - -
Tpr2g1196 252 MobiDBLite consensus disorder prediction 1 15 - -
Tpr2g1196 252 MobiDBLite consensus disorder prediction 1 37 - -
Tpr2g1196 252 MobiDBLite consensus disorder prediction 216 233 - -
Tpr2g1196 252 PANTHER TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE 96 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1196 Tpr-Chr2 14028015 14029527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1196 114 165 C2H2 Transcription Factor Family AT4G35280 56.364 9.47e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr2g1196 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1196 - - mtr:MTR_5g023910 172.17