Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1194 ATGGATACATCTCTCTCTTTCTCTAGACTCCTCTCTTCTTCCACCACCACATCACTCTTATCTACCAAAACCAAAACCCTCTCTTCCAATTTTACCCTCCCCCTCAAACTCAACCGTTTCAACCCAAAACCTCTCCGATTTTCCACTTCATCCAAAATCTCCGCCACCATCTCCGTCGGCGACAAACTTCCCGAATCCACCTTCTCATACCTCGACCCCGCCGGCGAAGTCCAAACCATAACAGTTTCCGACCTAACAAAAGGCAAAAAAGCCGTTCTCTTCGCCGTTCCAGGAGCTTTCACACCAACATGCTCACAGAAACACTGCCAGCTTATCATGTGCGATTGTTCCAGCTTAATAGGGTGTTTTAGATTCGTTTTTCAAAAGCTTTGCGCGCGTAAATTGATTCTGATTATGGGAATACTATGCGGCTTTGTTTCTAGCAATTGGGCTGAATCAGTCATCCAATTCGATTTCGAAATGGCAACCCAATTTGACATGTTGTGCGATGTTCTTCCTGGGCATAATTCATGGAAGTTCAAAGTTCGTGTCCTCCGTATGTGGGCAATTTCTTCTTTTATGAAGCCTAATGAGTTGAACTCTATGGAAATGGTGCTGATAGATGAGAAGGGAGGTAAGATTCATGCCTTGATAAGGAAAGAATTGGTTTACCTATTCCAGAATAAATTAAAGGAAGGGGAAGTTTATAAGCTATCAAACTTTGATGTTGTTCCAGTCGTTGGATTTTATCGTACAACTCTGCATCCTTACAAATTGATTTTTCGATCGAATACCAAAGTTCAGAATTTTGCGAGTTCTGATATTCCTATTTTGGGATTTTCTTTCACCGATCTTGCTGAAGTGGCTAGCTACTCTGTTAACTATGATTACCTAATAGATGTCATTGGTTTAATCTCTGGTATATCAAATGAGAGGGAGTATATTCGTGCTGGCAAAGTCATCAAGATGGTTGTGCTTGAACTTACAGACAATAGTGGTAAATGTGAATGCGCGTTGTTTGGTGATCATGTTGATGAGTTGCAAAGATTAATTGGTAATTGTCCTTCCGGTCTCCACGTTGTTGCACTACAGTTTGCCAAAGTTAAAATATTTAGAGGGAAAGTTTCCATTCAAGATGTTATGAATACCACAAGGATTTTTCTTGACCCTGAGATTAAAGAGACATCCGAGTTAATAAAGGGGTTAGCCATTGCTGGTATGTCAAACTCCGAAAAAAGTATTGAGCAAATTAACTCCAAAGTATTGAGCAAAATCTATAACCACACAATTAGTGCAGAAACTACTAAAGTGTCTGCAAATAGATCCGATGAAAAAGCAATAACAATAGAACTTCATGTACAAGGATTCTATAAGCTTTTTGTTCAGCCTTTGGCTGGACTTCAACCTATACCAACCGAAAGTGATTTTATTGTATCTCCTATCTATAAATACAGTTTCAAGATTCCTCTTTTCTATCTCTCTATTTTATCTTTCATTTTATCTCGAAGGTTGGCCAATTTACCCATTAGCAAGGATTTAGCTAATTATATTGAACCCTATATTGTTGAAAATTGCATTTCAATGGGACAACAATTTGGAGAGAAAGAATTTAAGATTGTTTTTTATATTGAGGTCGTTGAAATAGATCTGGCAGATTGTGAAGATTGCGATGATTATCGTAGACGCGGTATCGTTTGA 1698 0.3875 MDTSLSFSRLLSSSTTTSLLSTKTKTLSSNFTLPLKLNRFNPKPLRFSTSSKISATISVGDKLPESTFSYLDPAGEVQTITVSDLTKGKKAVLFAVPGAFTPTCSQKHCQLIMCDCSSLIGCFRFVFQKLCARKLILIMGILCGFVSSNWAESVIQFDFEMATQFDMLCDVLPGHNSWKFKVRVLRMWAISSFMKPNELNSMEMVLIDEKGGKIHALIRKELVYLFQNKLKEGEVYKLSNFDVVPVVGFYRTTLHPYKLIFRSNTKVQNFASSDIPILGFSFTDLAEVASYSVNYDYLIDVIGLISGISNEREYIRAGKVIKMVVLELTDNSGKCECALFGDHVDELQRLIGNCPSGLHVVALQFAKVKIFRGKVSIQDVMNTTRIFLDPEIKETSELIKGLAIAGMSNSEKSIEQINSKVLSKIYNHTISAETTKVSANRSDEKAITIELHVQGFYKLFVQPLAGLQPIPTESDFIVSPIYKYSFKIPLFYLSILSFILSRRLANLPISKDLANYIEPYIVENCISMGQQFGEKEFKIVFYIEVVEIDLADCEDCDDYRRRGIV* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1194 565 SUPERFAMILY Nucleic acid-binding proteins 280 405 IPR012340 -
Tpr2g1194 565 Pfam Redoxin 59 111 IPR013740 GO:0016491
Tpr2g1194 565 Gene3D Glutaredoxin 54 168 - -
Tpr2g1194 565 SUPERFAMILY Thioredoxin-like 56 111 IPR036249 -
Tpr2g1194 565 SUPERFAMILY Nucleic acid-binding proteins 165 268 IPR012340 -
Tpr2g1194 565 Gene3D - 169 269 IPR012340 -
Tpr2g1194 565 CDD RPA1_DBD_A_like 181 267 - -
Tpr2g1194 565 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 172 424 - -
Tpr2g1194 565 CDD RPA1_DBD_B_like 300 400 - -
Tpr2g1194 565 Gene3D - 273 408 IPR012340 -
Tpr2g1194 565 Pfam Domain of unknown function DUF223 203 295 IPR003871 -
Tpr2g1194 565 PANTHER REPLICATION FACTOR A 1, RFA1 172 424 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1194 Tpr-Chr2 13996329 13998673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1194 173 398 Core DNA Replication Machinery Family AT4G19130 25.751 5.71e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1194 - - mtr:MTR_8g062030 263.077