Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1193 ATGGGAAGGAGACCGGCAAGGTGTTATCGACAAATTAAGAACAAGCCGTATCCCAAGTCGCGGTTTTGTCGTGGTGTTCCCGATCCCAAGATCAGAATTTATGATGTTGGAATGAAAAAGAAGGGTGTTGATGAATTCCCATTCTGTGTTCATTTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCACTTGAAGCTGCTAGGATTGCTTGCAACAAGTATATGTCGAAGTTTGCCGGAAAGGATGCATTCCATTTGAGAGTTAGGGTTCATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACCGGTATGCGAGGTGCATTTGGAAAGCCACTTGGAACTTGTGCTAGAGTAGCTATTGGGCAGGTCCTTCTTTCAGTCCGTTGCAAGGATGGAAATAGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAAGTTTCCCGGTCGTCAAAAGATCATTGTCAGTAGGAAGTGGGGTTTCACCAAGTTTAACAGGACTGATTATCTAAGGTACAAGTCAGAGAATAGGATTTTGCCTGATGGTGTGAATGCAAAGCTTCTTGGGTGCCACGGACCATTGGCTAACCGTCAACCTGGACAAGCTTTTTTGAATGCCAGTGTTAATGAATAG 669 0.4454 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDGNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLRYKSENRILPDGVNAKLLGCHGPLANRQPGQAFLNASVNE* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1193 222 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 Gene3D Ribosomal protein L10e/L16 1 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Tpr2g1193 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr2g1193 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1193 Tpr-Chr2 13984597 13986343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1193 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.215 4.38e-145 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1193 K02866 - pvy:116105818 443.351