Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1191 ATGGGAGGTGACGCAACCGCTGATACTTCGACGGAGCAACAATCCACCGACGGAGTTAAGATCAACATTCGTTGTTCCAATGGTTCCAAATTTTCCGTTCAAATTAGCCTCGATTCCACCGTTAGTTCCTTCAAGGATGTTGTTGCTCAGAACTGTGATATCCCTGCTGATCAACAGCGTTTGATTTATAAGGGTCGGATCCTTAAGGATGATCAAACTCTTCAAAGCTATGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTTACGCCTGCAAATACAACTGCTGGGACTAATACCGGTGGGGCCAATACCACAACTAATGCTAGAGGTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGACCTGGACTTGGAGCTTCGTTGTTTCCAGGTCTAGGTGGTATCAATGGGATGGGAGGAGGAGGTGGCCTCAATAGTTTATTTGGAGCGGGACCTCCAGATCTTGAACAACCATTTATGTCAAATCCTAATTTAGTGAGAGAAATTATGAACTCACCTGCCATGCAAAATTTATTAAATAATCCCGAGATAGTGCGCAATCTTCTAATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGTTGGCACACATACTTAATGATCCAAGCACACTTCGCCAGACACTTGAGGCTACAAGGAACCCCGAGATCATGCGTGAAATGATGAGGAATACAGACAGAGCTATGAGCAATATTGAATCTTCTCCCGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAACACAGGAAATGAGAGCGCCAGAGGTTTGGGGACTCAAGGTGGGCAAACGAGGAATCAATCAACCAATCCCTCAACTACTAGTGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTCCAACTGGAGGTGCCCAACCTAATGTTAGGAGGTCAACAACTACTGGTGCGGATGCTCGGCAGCAGACGCCCACTGGCTTAGGCGGGCTTGGTATGCCAGACCTCGAAGGCATGTTGGGTGGTATGCCAGATGCTGGTTCATTGTCCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAATCCTCAAACAATGAATCAGATTCTTGGTACGAATACTGATCAGCGTGGGATGCCTGATCTAAATTCAATGAGAGAAGTGATGCAAAACCCAGAGTTTCTTCGCATGTTTTCCTCACCTGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAGCTTGGTCAGCAGCAATCAACACAGGAACCAGGTCAAACAGGTGGAGGCAATGTGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCTACCCAACTTTCCCAACTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCTACATCAGGAAATGTTCATGCAGCAGTTGAGCGGCTTTTGGGAAACACCGGACAGTAG 1617 0.4632 MGGDATADTSTEQQSTDGVKINIRCSNGSKFSVQISLDSTVSSFKDVVAQNCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANTTAGTNTGGANTTTNARGAGANEGGGLGGPGLGASLFPGLGGINGMGGGGGLNSLFGAGPPDLEQPFMSNPNLVREIMNSPAMQNLLNNPEIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNESARGLGTQGGQTRNQSTNPSTTSAEATSPVPNTNPLPNPWSSAPTGGAQPNVRRSTTTGADARQQTPTGLGGLGMPDLEGMLGGMPDAGSLSQLMQNPAISQMMQSILSNPQTMNQILGTNTDQRGMPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTQEPGQTGGGNVNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1191 538 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Tpr2g1191 538 Gene3D - 5 103 - -
Tpr2g1191 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Tpr2g1191 538 PANTHER UBIQUILIN 4 538 - -
Tpr2g1191 538 MobiDBLite consensus disorder prediction 318 344 - -
Tpr2g1191 538 CDD Ubl_Dsk2p_like 19 91 - -
Tpr2g1191 538 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Tpr2g1191 538 SMART CBM 345 396 IPR006636 -
Tpr2g1191 538 SMART CBM 195 234 IPR006636 -
Tpr2g1191 538 SMART CBM 144 182 IPR006636 -
Tpr2g1191 538 SMART CBM 399 434 IPR006636 -
Tpr2g1191 538 MobiDBLite consensus disorder prediction 270 310 - -
Tpr2g1191 538 Gene3D - 478 538 - -
Tpr2g1191 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Tpr2g1191 538 MobiDBLite consensus disorder prediction 270 352 - -
Tpr2g1191 538 CDD UBA_PLICs 496 534 - -
Tpr2g1191 538 SMART ubq_7 19 90 IPR000626 GO:0005515
Tpr2g1191 538 SMART uba_6 496 534 IPR015940 -
Tpr2g1191 538 SUPERFAMILY Ubiquitin-like 12 98 IPR029071 -
Tpr2g1191 538 Gene3D - 190 248 - -
Tpr2g1191 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Tpr2g1191 538 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 4 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1191 Tpr-Chr2 13891674 13897849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1191 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 4.37e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1191 K04523 - gmx:100797539 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1191 2 13891674 13897849 Tpr4g4375 4 51013440 51018754 PCT