Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1163 ATGTTCAATCTTTCGACAGTTGTGTATAATCCTCAACCGAACACACTCTTCTTTTCTCCATTCCCATTCTTCCATTCTTCTCTCACACCCCACAAGTTTCAATCTCTCAAATTCCCCACAAACTCCAACCTCCACAATTCTCTCTCCTTAACACACCAAGATGATGATGATGACAACTACGAAGAACATGTCATCGGAGATTGTCTTGTCTTCGAAGATGGAATTTTCGAAGAACCCATTTTTCCATCCGACAACCTCGTAGACAAGAAAAAAACAACACCCATTTCGAAGAAAAAGAAGAAAAAACCAACGACAGTGATTAAGTCTGAGAATTTGGTTCCTGATAAATGGAGAGAAGTTCAAGCAGAGTTAAATATAACGAAGAAAGATAGGCGTAAGATAGCTCAAGAAATTGAGTTTAACAGTAAGGTTTTGAAGAAGAAAAGAGGTTTAGTTGCTTTGAGGGATATAAATATGGAAGAGTATAAGGCTTATAAAGAAGCTAGATTGGCTCAGTTGAATCCTATTGTTCTTGATAAGCCTCCAAGTTTTAGTTTTGCTGAGAAAGATGATGATTCTGAAGAGGAATTGGGTGATGAGTCTGGTGATGATGAGAGGGCGAAGCCTGAGAATCCTAGGTGGGCTGTTTATGGGAGAGGTTTGGAGGATGTCAGTGAGTTTTTGAACAGTGAGAGGTATGACCCTGCTGCTAATAAAACTGAAGGTCATCCTAGGTTGTTTACCAGGGAGGAGAGGGCTATGCTCAGTCAGAAGAAGGCAGACTTCGAAGTTGCTACTTCAGATAAATGGCTTCCTCTGCACACTTTTGCTGCGAGCGGAGAATCTTTCCTTGTAGAAACTATATTGAAGCATGGTGTTGATATTAATGCTACGGATAAGGATGGTTTGTCTGCTCTTTACAAAGCGATAATTAGAAGAAAGCATGCCATAACCAATTATCTCCTAAGAAACTCGGCCAATCCCCATGTACAAGATAATGATGGGGCCACCTTGATGCACTACGCTGTACAAACGGCATCTGTCCCAACAATTAAAGTACTCATGTTGTATAATGTGGATATAAATCTTCCGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAAACTCAGAGAAATGATATAGTGAGGCTTCTGCTGATTAAAGGCGCTGATAAGACATTAAAAAACAAGGATGGTTTAACTCCGCTCGACCTTTGCCTTTACTCTGGTCAAAGTGCCAAAACATATGAGCTAATCAAGTTGTTGAAACAGCCTCCAAAACGATATAGAAGTAGAAATGCACGACGGATGGAGGGATGA 1326 0.4057 MFNLSTVVYNPQPNTLFFSPFPFFHSSLTPHKFQSLKFPTNSNLHNSLSLTHQDDDDDNYEEHVIGDCLVFEDGIFEEPIFPSDNLVDKKKTTPISKKKKKKPTTVIKSENLVPDKWREVQAELNITKKDRRKIAQEIEFNSKVLKKKRGLVALRDINMEEYKAYKEARLAQLNPIVLDKPPSFSFAEKDDDSEEELGDESGDDERAKPENPRWAVYGRGLEDVSEFLNSERYDPAANKTEGHPRLFTREERAMLSQKKADFEVATSDKWLPLHTFAASGESFLVETILKHGVDINATDKDGLSALYKAIIRRKHAITNYLLRNSANPHVQDNDGATLMHYAVQTASVPTIKVLMLYNVDINLPDNDGWTPLHLAVQTQRNDIVRLLLIKGADKTLKNKDGLTPLDLCLYSGQSAKTYELIKLLKQPPKRYRSRNARRMEG* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1163 441 Gene3D - 336 427 IPR036770 -
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat profile. 268 300 IPR002110 GO:0005515
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat profile. 334 366 IPR002110 GO:0005515
Tpr2g1163 441 MobiDBLite consensus disorder prediction 182 213 - -
Tpr2g1163 441 PANTHER ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN, CHLOROPLASTIC-LIKE 21 429 - -
Tpr2g1163 441 Gene3D - 235 335 IPR036770 -
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat region circular profile. 367 399 - -
Tpr2g1163 441 Pfam Ankyrin repeats (3 copies) 318 398 IPR002110 GO:0005515
Tpr2g1163 441 SUPERFAMILY Ankyrin repeat 254 415 IPR036770 -
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat profile. 367 399 IPR002110 GO:0005515
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat profile. 301 333 IPR002110 GO:0005515
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat region circular profile. 268 300 - -
Tpr2g1163 441 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 21 429 - -
Tpr2g1163 441 ProSiteProfiles Ankyrin repeat region circular profile. 334 366 - -
Tpr2g1163 441 SMART ANK_2a 301 330 IPR002110 GO:0005515
Tpr2g1163 441 SMART ANK_2a 367 396 IPR002110 GO:0005515
Tpr2g1163 441 SMART ANK_2a 334 363 IPR002110 GO:0005515
Tpr2g1163 441 SMART ANK_2a 268 297 IPR002110 GO:0005515
Tpr2g1163 441 SMART ANK_2a 400 429 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1163 273 412 Ion Channels AT2G25600 33.571 4.85e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1163 - - mtr:MTR_5g022050 602.053