Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1162 ATGGAGGATTCTCCAGTAAGAAGGCTTTCAAGGTCCCCTTCTCCATGGAGGGCTCAATCAAGATCCAGGTCTCGGTCGGGATCCCTTGAAAGGCGCAGACCTACGTCTCGATCAAGGTCTCCTGAAATGCAAAGGCCTAGGTCTCTTTCAAGGTCTCCTGAAATGCAGAGGCCTAGGTCTCTGTCAAGGTCTCCTGGAATGCAAATGCACAGGTCTCGGTCAAGGTCTCTCGAAAGGCAAAGGCCTCCTAGGTCTCGGTCAAGATCTCTTGAAATGCAAAGGCCTAGATCCCCCTCGAGAAGTCGTGGCAGATCAAGATCAAGAAGTCCTGATAGGAATGGTGGGGATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGTATATCTCGAGGTTTTGCGTTTGTCACTATGGATTCTGTTGAGGATGCAAATCGCTGTATCAAGTACCTCAATCAATCTGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCAAAGAGAAAGCGACCAAGAACTCCCACGCCTGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGACCTCCGCGTGGTGACCGTGGAAGGCATCGGGGTGGATTTGGCCGTGATGATTATCCATATCGAGGTGGCAGGGATTATTCACCAAGGCGCTCACCTTATCGAGGTGGCAGGGATTATTCACCAAGGCACTCTCCCTACGGTGGAAGGTATAGGAGGGATAGGTCTAGGTCGCCTTATGCTCCATATGGTAGCCCAGATAGGAGGTATGCTCGTGGGCCTAGGTGA 870 0.5057 MEDSPVRRLSRSPSPWRAQSRSRSRSGSLERRRPTSRSRSPEMQRPRSLSRSPEMQRPRSLSRSPGMQMHRSRSRSLERQRPPRSRSRSLEMQRPRSPSRSRGRSRSRSPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYITVERSKRKRPRTPTPGHYLGLKNTRDYGPPRGDRGRHRGGFGRDDYPYRGGRDYSPRRSPYRGGRDYSPRHSPYGGRYRRDRSRSPYAPYGSPDRRYARGPR* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1162 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Tpr2g1162 289 PANTHER RNA RECOGNITION MOTIF 3 63 - -
Tpr2g1162 289 PANTHER RNA RECOGNITION MOTIF 61 285 - -
Tpr2g1162 289 MobiDBLite consensus disorder prediction 24 40 - -
Tpr2g1162 289 MobiDBLite consensus disorder prediction 191 289 - -
Tpr2g1162 289 CDD RRM_RBMX_like 115 194 - -
Tpr2g1162 289 MobiDBLite consensus disorder prediction 72 111 - -
Tpr2g1162 289 MobiDBLite consensus disorder prediction 214 252 - -
Tpr2g1162 289 Gene3D - 68 207 IPR012677 -
Tpr2g1162 289 MobiDBLite consensus disorder prediction 41 71 - -
Tpr2g1162 289 SUPERFAMILY RNA-binding domain, RBD 113 225 IPR035979 GO:0003676
Tpr2g1162 289 MobiDBLite consensus disorder prediction 1 123 - -
Tpr2g1162 289 SMART rrm1_1 117 190 IPR000504 GO:0003723
Tpr2g1162 289 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 61 285 - -
Tpr2g1162 289 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 3 63 - -
Tpr2g1162 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1162 Tpr-Chr2 13588045 13590793 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1162 112 201 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 2.53e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1162 K12897 - gmx:100527350 296.204