Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1151 ATGGATTTTGTACCAAATCCATGTCCTTCTCGTTCATCTTTGTTCGGTTCCTTTGGAAATCTCGTTGACAAAGTTAAACAATTTGGTACCCTTGCAATTTCTGCTATCATTGGGAACATTTTCTCTGCGATCTTGACCTTTTGTTTTGCATTAGTGGGGACGTTATTGGGAGCTATGACAGGAGCTTTGATAGGTCAAGAAACTGAGAGTGGTTTCATTCGAGGTGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTTTCCATTGAAGTTTTTGAATCTTCTCTTGTTCTTTGGCATTCTGATGAATCTGGGATTGGTTGTCTTTTATATTTGATTGATGTTATTGCTAGCTTGTTGAGTGGAAGACTTGTGCGTGAGAGGATTGGTCCTGCCATGTTGAGTGCTGTTCAAAGTCAGATGGGTGCTGTTGAAACAAGCTTTGATGAGGTTCAAAACATCTTTGACATTGGTGGTTCCAAAGGGTTATCTGTAGATTCAGTTGCGAAAATCCCAAAAATCAAAATCACCACGGACAATATGGATGCATCAGGGGAGAAAGTTTCTTGTTCAGTTTGTCTCCAGGACTTTCAACTTGGAGAGACAGTTAGAAGTTTACCTCATTGTCATCACATGTTTCACCTTCCTTGCATAGATATGTGGCTCTTAAGGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTGA 705 0.4085 MDFVPNPCPSRSSLFGSFGNLVDKVKQFGTLAISAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWHSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDIGGSKGLSVDSVAKIPKIKITTDNMDASGEKVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDMWLLRHGSCPLCRRDL* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1151 234 SMART ring_2 189 230 IPR001841 -
Tpr2g1151 234 Pfam Ring finger domain 188 231 IPR001841 -
Tpr2g1151 234 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE, YMGG-LIKE GLY-ZIPPER-RELATED 10 234 - -
Tpr2g1151 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 234 IPR013083 -
Tpr2g1151 234 CDD RING-H2_PA-TM-RING 189 231 - -
Tpr2g1151 234 ProSiteProfiles Zinc finger RING-type profile. 189 231 IPR001841 -
Tpr2g1151 234 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 10 234 IPR044523 -
Tpr2g1151 234 SUPERFAMILY RING/U-box 182 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1151 Tpr-Chr2 13470273 13472484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1151 20 234 C3H Transcription Factor Family AT5G66070 76.279 1.06e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1151 - - lja:Lj2g3v1670720.1 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1151 2 13470273 13472484 Tpr4g4321 4 50388431 50391563 PCT