Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1120 ATGGATGCCCAAGCCAAGAAAAAAGCAATGTTCCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCACTTGTTAGGTATAATGAATTTGATCAGCCTGTTTGTCGGGTTTGTGAAGTTGTTCTGAAGTCGGAGTCCCTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGGCAATAAGTAATCTTAAAGCTAATGCGGCTGGGTTAACTAAGCAAAACAACGCAAAGCCTGATATTCCCAAGGCTAAACCTGAACAGTCTTCAAGCTCACAGTTCAAAATTCCCCAAAGTCCACAAGAAGTACCTAAACCTCAGTCATCATCAGTTCTTCCGCCAGATTTTTTTGACAACAATGATGCACAAAAGACAAGATATGAAAAGGAGTCGGACTCAGATTTAGGTGGAAACGTGGGGCCTTCTGCTCAAAGTTTGGCGTCAAACTCGAAGGAGAAAGACCATTTCAATGGAAATAATACTACACAGTCTAAGGTTAATCAAGCAACAATGGAGGCTAAGAAGACATCAGTCAAGACTATAGATGCAGAGACCAAACAAGGAAAAAGAGCTCTGCCTGAAGGGTTTTTTGATAATAAAGAAGCTGATTTGCGGGCACGTGGCATTAAGCTAGTTAAGCCAGATGTCAAAGACGAATCCCCAGCAGTTCGTGTTTACACCGTCTGCGATGAATCAAGATATTTGATTGTTAGGAATGTTCCAGCATTAGGTTGTGGCAATGATTTGCTCCAACTTTTTTCAACCTATGGAGAAGTAGAGGAGTGTAAGCCAATGGATGCAGAAGACTGTGAGCAATTCACTGATGTTTATTGGATCAAATTTCGACTTTTCAGCAATGCCAGGTTTGCAAAAAGGAAATTGGATGAGTTTGTTTTCCTTGGAAACCGACTGCAGGTTTCGTATGCTCCCCATTTTGAGAGTTTGTCTGATACAAAGGATAAATTGGAGGGAAGAAGAAGCGAGATTTTAGCTCGGTTAAACCCTAGAAGATCCAAAGAGACTATAGCTTCAAACTCTAGGCCCCTGATTAACTCAAACATCAGTTGCATATCAGAACATTTAGAGCCTAATCAAAGGAATGCGGAACTTGAAGGAAGATCGAACAACGGTAATCTTTCAAAAAGAACGGTTTCATCTAATGAGGATTATTTTTCCTCCCCTTCCATGAACCAAACAGTGAGGATTGTCAGGGACAAACTTGATAAGATTCAATCCAGTGGTGAGCATCTACAAGCTGGATCAACATCAAAAAAAGCACGAGTTGATAATAGGAGGAGGATTTGA 1317 0.4115 MDAQAKKKAMFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCEVVLKSESLWDAHQVSRKHREAISNLKANAAGLTKQNNAKPDIPKAKPEQSSSSQFKIPQSPQEVPKPQSSSVLPPDFFDNNDAQKTRYEKESDSDLGGNVGPSAQSLASNSKEKDHFNGNNTTQSKVNQATMEAKKTSVKTIDAETKQGKRALPEGFFDNKEADLRARGIKLVKPDVKDESPAVRVYTVCDESRYLIVRNVPALGCGNDLLQLFSTYGEVEECKPMDAEDCEQFTDVYWIKFRLFSNARFAKRKLDEFVFLGNRLQVSYAPHFESLSDTKDKLEGRRSEILARLNPRRSKETIASNSRPLINSNISCISEHLEPNQRNAELEGRSNNGNLSKRTVSSNEDYFSSPSMNQTVRIVRDKLDKIQSSGEHLQAGSTSKKARVDNRRRI* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1120 438 MobiDBLite consensus disorder prediction 89 118 - -
Tpr2g1120 438 MobiDBLite consensus disorder prediction 369 394 - -
Tpr2g1120 438 SUPERFAMILY beta-beta-alpha zinc fingers 31 71 IPR036236 -
Tpr2g1120 438 Gene3D - 232 330 IPR012677 -
Tpr2g1120 438 SUPERFAMILY RNA-binding domain, RBD 225 317 IPR035979 GO:0003676
Tpr2g1120 438 PANTHER UNCHARACTERIZED 221 438 IPR039599 -
Tpr2g1120 438 CDD RRM_RBM48 227 326 IPR034264 -
Tpr2g1120 438 MobiDBLite consensus disorder prediction 70 118 - -
Tpr2g1120 438 MobiDBLite consensus disorder prediction 415 438 - -
Tpr2g1120 438 MobiDBLite consensus disorder prediction 130 183 - -
Tpr2g1120 438 Coils Coil 58 78 - -
Tpr2g1120 438 Gene3D Classic Zinc Finger 32 70 - -
Tpr2g1120 438 MobiDBLite consensus disorder prediction 141 179 - -
Tpr2g1120 438 Pfam Zinc-finger of C2H2 type 39 61 - -
Tpr2g1120 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1120 Tpr-Chr2 13155399 13162977 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1120 1 223 C2H2 Transcription Factor Family AT3G02860 48.485 1.35e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1120 K24824 - gmx:100527829 342.043