Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1078 ATGTCTGCCGCGGAGGAGAAGAAGCCAAAAGCTTCAAAAGAGAAGAAGACCAAAACAGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGTTAGCTCTGAAAGAGAAAAACGGTTCAAGTCCTTACGCTATAGCCAAATTCATGGAGGAGAAGTTTAAGTCGGTGCTTCCAGCGAATTTCAAGAAGATGTTGAATCTGCAGCTGAAGAATCAAGCTGCCAGAGAGAAGCTGGTGAAGATCAAGGCTTCGTATAAGCTATCTGAAGCCGAGAAGCCGAAGAAGAGCACGAAGGTTACGAAGGGTGACGTGGCGGAGAAGAAGAAACAGAGCCAGAAAAGGAAGAGAAATGTTACGGTTGGTGGTACGAAGAGTAAGAAAAATGAGGCGGTTAAGAAGGTTGTGAAGAAGAAGAAAGGTAAGAAGGTTTCTGGGCCTGGGAAGCCCAAACAGCCCAAGTCCATTAAGTCGAATAATAATAAGAGGGCTAGAAAAGCTACTGTTGCTAATGCTTGA 522 0.4425 MSAAEEKKPKASKEKKTKTASHPPYFQMIKEALLALKEKNGSSPYAIAKFMEEKFKSVLPANFKKMLNLQLKNQAAREKLVKIKASYKLSEAEKPKKSTKVTKGDVAEKKKQSQKRKRNVTVGGTKSKKNEAVKKVVKKKKGKKVSGPGKPKQPKSIKSNNNKRARKATVANA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1078 173 Pfam linker histone H1 and H5 family 22 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr2g1078 173 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g1078 173 MobiDBLite consensus disorder prediction 132 148 - -
Tpr2g1078 173 SUPERFAMILY "Winged helix" DNA-binding domain 18 101 IPR036390 -
Tpr2g1078 173 PANTHER HISTONE H1 4 169 - -
Tpr2g1078 173 MobiDBLite consensus disorder prediction 86 173 - -
Tpr2g1078 173 MobiDBLite consensus disorder prediction 1 23 - -
Tpr2g1078 173 Gene3D - 16 121 IPR036388 -
Tpr2g1078 173 MobiDBLite consensus disorder prediction 86 112 - -
Tpr2g1078 173 PANTHER HISTONE H1 4 169 - -
Tpr2g1078 173 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr2g1078 173 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr2g1078 173 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr2g1078 173 PRINTS Histone H5 signature 143 160 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr2g1078 173 CDD H15 19 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr2g1078 173 SMART h15plus2 19 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1078 Tpr-Chr2 12679212 12680090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1078 14 91 Single Myb Histone (SMH) Gene Family AT1G72740 38.462 3.46e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1078 K11275 - gmx:100500169 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1078 2 12679212 12680090 Tpr2g1078 2 12679212 12680090 ECH