Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1071 ATGCGAACGCTTTGTGACGCTTGTGAGAGCGCTGCTGCTATTGTTTTCTGTGCTGCTGATGAAGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGCTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCGCGCTGCGACATATGTGAGAATGCACCTGCTTTCTTTTATTGCGAAACGGATGGAAGTTCCCTTTGTTTGCAATGCGATATGATAGTTCATGTTGGTGGTAAAAGAACACATGGAAGATATCTTTTGTTTAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTAGTAATGCCGACAACCCAGCTTCACAACCTTTGGATCCCGGTGATATTAAAAGAGGACAAAGTCCGCTTCCCAAACAAAAATCAGGAGAGAAGCAACAAAATAATCATCGGATGCCTCCGGTTCCAACTTCAGAACCTGATGCTGGTGGAAATACTAAGATGGACAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACACGAACATGCATCAAATCATCAGCCATAG 561 0.4296 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKSGEKQQNNHRMPPVPTSEPDAGGNTKMDNKLIDLNMKPNNRIHEHASNHQP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1071 186 SMART bboxneu5 1 47 IPR000315 GO:0008270
Tpr2g1071 186 SMART bboxneu5 51 96 IPR000315 GO:0008270
Tpr2g1071 186 Gene3D Classic Zinc Finger 2 91 - -
Tpr2g1071 186 MobiDBLite consensus disorder prediction 172 186 - -
Tpr2g1071 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Tpr2g1071 186 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Tpr2g1071 186 MobiDBLite consensus disorder prediction 133 148 - -
Tpr2g1071 186 CDD Bbox1_BBX-like 4 47 - -
Tpr2g1071 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Tpr2g1071 186 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 185 - -
Tpr2g1071 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 185 - -
Tpr2g1071 186 CDD Bbox1_BBX-like 56 96 - -
Tpr2g1071 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Tpr2g1071 186 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Tpr2g1071 186 MobiDBLite consensus disorder prediction 104 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1071 Tpr-Chr2 12554929 12557951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1071 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 60.326 1.19e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tpr2g1071 zf-B_box 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1071 - - gmx:100780544 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1071 2 12554929 12557951 Tpr2g1071 2 12554929 12557951 ECH
Tpr3g2367 3 22466113 22468120 Tpr2g1071 2 12554929 12557951 ECH