Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1068 ATGGAAAATCCGAAGCCGGAAACACCGGCGACTGATACGGAGACGAAGCAAGTCGAAGTTACTGTTTCCGATGTCAAGATGACGGAGAGAGACGGTGGTTGTTGGCCGCCTAAAGTAGTTCTAGCTGTTGCCGCCGTGGATAGTGATATTTTGCAGAAGAAGCGTGGTCGTCCGACGAAAGGAGTTCCGAAAACAGCTCCTCCGCCGAAGCAGAAAAAGGAAGATGAGGATGTTTGTTTTATATGCTTTGACGGTGGAAGTCTCGTTCTCTGCGATCGCCGGGGTTGCCCTAAAGCATATCATCCGGCATGTGTCAAGCGAGATGAAGCGTTTTTTCGTTCAAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCTCTTGTCAGAAAGCATCCCATTATATGTGCTATACTTGTACGTATTCTTCGTGCAAGGGGTGTATACAAAATGCTGATTTTGTTTGTGTCAGAGGAAATAAAGGTTTGTGTGGAATATGCAAGAAAACTATAATGCTGATTGAGAACAGTGCCCAAGGAAATAAGGAAATGTGTGAAGTGGATTTTGATGACAAGAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGGTATATTTGAAAGAGAATCTATCTTTAACATTTGATGAGCTCCTTCAAGCTAAAAACCCTTTGAGAAGTGCTGCTCCTATGGTACAAACTTCCCATGAACTTCATCATCGTAAAGATGACAAAGGTTCTGGCTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTCGAAAAACAAGAAGTTTAAGGGACCTTCAGGTGGTGACACGGGTGTGTCTTTGCCTGATTGCACGAGATGGGCATCAAAGGAGCTTCTAGAGTTTGTCTCATATATGAAAAATGGTGATACATCTCTCCTGACTCAATTTGATGTCCAGAATCTCTTGCTGGAGTATGTTAAGAAAAACAATCTGCGTGATCCTCAACAGAAATCCCAGATTGTTTGTGACTCTAGACTAATAAATTTGTTTGGAAGAGCACGTCTTGGCTACATTGAAATGCTAGTGCTCCTTGAGCCCCACTTTCTTATAAAAGACAATACTGGTGCAGAAAATACTATTGGAGGAATTAGTGATGCTGCTGCTAATGGAAAGGAGGCCACTGACAATGACAATAAACAGTCGATATTAGTTAATGATAAGAGATGTACAACAAGTAAAAAGGCCGATGTGCCTGTGCCACAAAATAATCATGATGCATATGCTACAATAAATGCTCACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAGTCTGACTGATGATATTGAAAGGATTCATGAGAAGGTTGTTGGTTCTTTTGTGCGGATAAGAATCTCTAGTGGTGATCAGAAACAAGACATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCCTACAAAATTGGCACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACCGGAAGGAGGTCATACCCATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGATGAATGCAAGCGATTGCGTCAGAGTATAAAGTATGGGCTTTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCATTGACATTTCAAGAAATTAGAGTTAATGATTTGTTGGAAGCCGAGAAATTGCGGCTTAATAATCTTCGTGATAGAGCAAGCGAGAAGGGGCACAGAAAAGAGCTTAAAGAATGCGTGGAGAAGTTGCAGCTACTAAATTCACCAGAGGAACGTCAGCGCAGGCTGCATGAAATTCCAGATGTACACTCTGACCCTAATTTGGATTCGTTGTATGAGTCTGATGAAGATGCTGGAGAATCAGATGACAATAAAAAAGATGGCAATATGCCTATTTTCTCCAGAATTTGGGATGGTGTCTTGAATGGTGTTGGGGGAAGAACACGAGACTTAACCACTACAAGTGACCCAATTGGGAATACATGCTTAGCAAAGAAGGATACCAACCCTAACGAAACTGCTACTGATGATAATGCTAATGTTGTAATGAAATCAGAAGTGTCTAGTGTTGCAGTGGATATTTCATCTCCACTTCTCTCTACAGGGATTGAGCAGTCATTTGACGATTTTATGAATGATAAATCATGGCATTATCAGGATCCATCCGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGAAAGCGGACATTTCCCTCGAGATCTCAGAATATGGAAGATAGATGACAAACCAGTAAACTCCATATTGTTAACTGATGCACTTGATGGGAAGTGCTCCAAAAATGTGTCATTGCAGAACAACAGCCTATTGCTCTCTTTAGGAGCCAGTGTTGCATTGGGTGACAAAGAAAGCAGTCAGGATGGTGGGAGGAATTCAATGACGAATGAAATTTCTGCAGATAGCCGAATCATCGAACCGATAAGAGAACAAAAAGTGGATGATACTTCTACCCAGTCCAATGGTAAAGATGAATCCGTTAGGAGCAATGGATGGCATGACCAGTCACATGTACACCCTTCGCTACAACCAACTGCCTTTTCTGAAAAATTGAATGAGAATCATACCAACAAATTAAGGGAGGATCGTGTGATTGAGAAAAACTCTGAAGATATTGGAAATCATGGCTCAAACAGGACTTCTGGTGGTCAGAATCATCAGAAGCAATCTGATAGTGAAGACAACTCAGGGCAATCATCAGGGCAAAACTGGAGACACCCAAATGTAAATATTTCTTCCACTTGCTTGGATACCACATCGACTCATGTTTCTGGGACAATAACATCACCTCTTAAGCTGGGATTTGATTTGCACCAACCGCCTTCTCCTCCAGCATGTCATGCAACTACATGGCAGGCTATTATTGGTGAACCGGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAGGTGGAGGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTCCAGAGCTCAGCCCAATGCTTGATGCAGGTAAAGGCGATGCATTGAGCTCCACTGGTGATTTACAGTTACTATCTCAATCCACAGCAGCAGAGGAACCATTGCAGCAAGCAGATGTCCAACATCATCAAAGAATATCACTGGAGCTTTCCTCAAGAAATTCTAAAGTTGACGTGGGTTCAAAGGACATATGTGTTTCGAGTAATCAATGGGAGTCAGGCTCGGAAAATTCTCATATTTTTCCATCCACTGCAACATTGAGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAGAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACGCAAATTGGGGAGTAGGACAGACGGCAGTAAATGAGAACAGAAGCTCACATTCACGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAAACAAGATATGGAAATGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGCAGGGAACCTGGTTTAGTTAGAGGTAGAGCTCAGTGGAACAGGCAACCAGTATTTGGTGTTGGTAATGGAGGCTCATATAGACCTCCGCCCAGAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAAGGGGCATCCTGTGATTACTTCCACCCATGA 3717 0.4235 MENPKPETPATDTETKQVEVTVSDVKMTERDGGCWPPKVVLAVAAVDSDILQKKRGRPTKGVPKTAPPPKQKKEDEDVCFICFDGGSLVLCDRRGCPKAYHPACVKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSSCKGCIQNADFVCVRGNKGLCGICKKTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWVYLKENLSLTFDELLQAKNPLRSAAPMVQTSHELHHRKDDKGSGSENSCIDIESNNSKNKKFKGPSGGDTGVSLPDCTRWASKELLEFVSYMKNGDTSLLTQFDVQNLLLEYVKKNNLRDPQQKSQIVCDSRLINLFGRARLGYIEMLVLLEPHFLIKDNTGAENTIGGISDAAANGKEATDNDNKQSILVNDKRCTTSKKADVPVPQNNHDAYATINAHNINLIYLRRSLMESLTDDIERIHEKVVGSFVRIRISSGDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVIPIDEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTFQEIRVNDLLEAEKLRLNNLRDRASEKGHRKELKECVEKLQLLNSPEERQRRLHEIPDVHSDPNLDSLYESDEDAGESDDNKKDGNMPIFSRIWDGVLNGVGGRTRDLTTTSDPIGNTCLAKKDTNPNETATDDNANVVMKSEVSSVAVDISSPLLSTGIEQSFDDFMNDKSWHYQDPSGKVQGPFSMLQLYKWNESGHFPRDLRIWKIDDKPVNSILLTDALDGKCSKNVSLQNNSLLLSLGASVALGDKESSQDGGRNSMTNEISADSRIIEPIREQKVDDTSTQSNGKDESVRSNGWHDQSHVHPSLQPTAFSEKLNENHTNKLREDRVIEKNSEDIGNHGSNRTSGGQNHQKQSDSEDNSGQSSGQNWRHPNVNISSTCLDTTSTHVSGTITSPLKLGFDLHQPPSPPACHATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFPELSPMLDAGKGDALSSTGDLQLLSQSTAAEEPLQQADVQHHQRISLELSSRNSKVDVGSKDICVSSNQWESGSENSHIFPSTATLSMTVDTTWRLGLESTHLEWGGMDQRNANANWGVGQTAVNENRSSHSRTSVVTPSFGDSQTRYGNDRFSVPRDRGFPGHGREPGLVRGRAQWNRQPVFGVGNGGSYRPPPRGQRVCKFYESGYCKKGASCDYFHP* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1068 1238 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 951 1238 - -
Tpr2g1068 1238 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 26 943 - -
Tpr2g1068 1238 SUPERFAMILY GYF domain 714 768 IPR035445 -
Tpr2g1068 1238 ProSitePatterns Zinc finger PHD-type signature. 79 139 IPR019786 -
Tpr2g1068 1238 SUPERFAMILY CCCH zinc finger 1213 1237 IPR036855 GO:0046872
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 887 920 - -
Tpr2g1068 1238 SMART rtf1 418 528 IPR004343 GO:0003677
Tpr2g1068 1238 SMART PHD_3 78 124 IPR001965 -
Tpr2g1068 1238 CDD PHD5_NSD 78 123 - -
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 593 612 - -
Tpr2g1068 1238 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 26 943 - -
Tpr2g1068 1238 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 951 1238 - -
Tpr2g1068 1238 SUPERFAMILY Plus3-like 420 548 IPR036128 GO:0003677
Tpr2g1068 1238 SUPERFAMILY SWIB/MDM2 domain 281 358 IPR036885 -
Tpr2g1068 1238 CDD GYF 715 768 IPR003169 GO:0005515
Tpr2g1068 1238 Gene3D SWIB/MDM2 domain 276 366 IPR036885 -
Tpr2g1068 1238 Pfam GYF domain 718 761 IPR003169 GO:0005515
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 593 631 - -
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 846 865 - -
Tpr2g1068 1238 Pfam SWIB/MDM2 domain 284 357 IPR003121 -
Tpr2g1068 1238 SMART gyf_5 716 771 IPR003169 GO:0005515
Tpr2g1068 1238 ProSiteProfiles Zinc finger C3H1-type profile. 1213 1238 IPR000571 GO:0046872
Tpr2g1068 1238 Gene3D - 419 548 IPR036128 GO:0003677
Tpr2g1068 1238 ProSiteProfiles SWIB/MDM2 domain profile. 276 359 IPR003121 -
Tpr2g1068 1238 Coils Coil 552 572 - -
Tpr2g1068 1238 Gene3D - 717 773 IPR035445 -
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 816 845 - -
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 866 886 - -
Tpr2g1068 1238 ProSiteProfiles GYF domain profile. 715 769 IPR003169 GO:0005515
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 228 250 - -
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 795 920 - -
Tpr2g1068 1238 ProSiteProfiles Zinc finger PHD-type profile. 76 142 IPR019787 -
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 233 248 - -
Tpr2g1068 1238 CDD SWIB-MDM2_like 281 357 - -
Tpr2g1068 1238 Pfam Plus-3 domain 423 526 IPR004343 GO:0003677
Tpr2g1068 1238 MobiDBLite consensus disorder prediction 799 813 - -
Tpr2g1068 1238 SUPERFAMILY FYVE/PHD zinc finger 56 123 IPR011011 -
Tpr2g1068 1238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 167 IPR013083 -
Tpr2g1068 1238 ProSiteProfiles Plus3 domain profile. 418 551 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1068 Tpr-Chr2 12528226 12535100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1068 75 156 PHD Transcription Factor Family AT5G36670 34.524 4.07e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Tpr2g1068 Plus-3 2.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1068 - - aprc:113869503 1883.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1068 2 12528226 12535100 Tpr2g1068 2 12528226 12535100 ECH