Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1067 ATGATGGAAGAACTACAGCAGCAACAGATTCAGCAACCGGTGATACCGGTCACCGGAGAAGTTAGGTTTTCTGAGAATTCGATCGGAGTCAACGCTTCCGATGTTGACTTCACGATGACCGACGGTGGTAGTTACGACACTGTTTTGAAAAAGAAGCGTGGTCGTCCACCGAAAGGAACTCTTCCTCCTCATCCACGGTTGAAAAAGCCGAAAGATGAAGAAGATGTTTGTTTTATTTGTTTCGATGGTGGTTCACTTGTTCTCTGTGATTATCGGGGTTGTCCTAAGGCGTATCATCCAACGTGTGTTAAGCGTGATGAAGAGTTTTTCCGTTTAACTGAGAAATGGAATTGTGGTTGGCATCTATGTAGCGATTGTGGCAAATCATGCCACTACATGTGCTATACTTGTACATATTCCCTGTGCAAGGGATGTACAAAAAAAGAATCTGATTTTGTTAGTGTCAGAGGAAACAAAGGTTTGTGTGGAGCATGCAAGAGGACAATAATGCTGATCGAAAACAGTGCCCTGGGAATTAAGTGTGAAGTAGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTACTTGAAAGGAAAGCTATCTCTTGATTATGATGAGATCCATCGAGCTAAAAATCCATGGAAAAGTGCTGTTCGTGCTAGTTGCAAGGCTCAAACTCCGCGAAAACTTCATCATCTTAAAGTTGACAATGGTTATGGATCCGAGAATTCCTGTGTAGTAGATTCAAATAGTCCAAAAAACAAGAAGGTTAAGGAAAATATTTGGACAAGTTTCTTGGACGGTGCCGGACACAATGCACAAGACTTGTCGACTACCTGTGAGCTAAATGGGAATACATGTGTAATAAAGAACCAAATCGGTCCTAACGAATCAGCAATCGATGATGCCACTAATCCAAGATTTGTGAGACTAAGAGAACCAGTCTGGCATTATCAGGATCCAAATGGGAATGTTCATGGTCCTGTTAGTATGTTGTTTCTCTGCAAGTTGAAAGGAACTGAACGTATCCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGAAAACTCTATATTATTATCTGATGCACTGAGTTTCAAGTGTTCCCAAAAAGTATCATTGCCACTCAACTGTGAACAACAGTCTTTGCGGGCCAGTGTTACATTAGAAACCACCACAGAAAATAGTCACGGTGGTCTTAGCAATGAAACAAGGAGTGCTAACAATCAAACTGTCAAGCAGGGCGAGGCGGAAAAGGTTGGTGATACTTATACCCCACCTAATGGTACGGATGAATCTGTTAAGAGCAATGGAGGGCACACTCCGTCTCCTGGTTTGACTACACAAGCAGATGGGAATATAAGTGACGGGCAAAGTGGTCATTTTGAACGAAGGGAAGCATCACCCAAATGTGACATTTCTTGTCATGATGGTCCCAACGTACACCCTGCACTACCTTCAATTGCCTTTAATGAGAAATTGATTGACAAACCTTCTGATAAAGTGGTGGAAGGTCATGGGAATGAGCAAAAATCTGAAGTGAATGGAAATTTGGGTTCCAATAGGTGTTCTGAGGATCCGAGTAATAGCGGGCAAAGTGATCAAAAGCAATCTGACAATGAAGAGAATTCGGGCCAATCTTCTGGTCAGAATTGGAGAGGCCCTAGTGTAATTCATCATCCACCAATGGATGCTTCTTCATGGATAGCATCAATCTTCGGCGATACTGATTGCCCATTAGTTGATGATTCAGTTTCAGATCTGTTGGAACAAGTAGCAGCAAAGGAGAAAGATGGTGTATTGGAAACTCCCACAGCAATAGAGTGGGATGATGAGTTGACTGAGGGTGCTATAACTGATTGTTTCAGTTTCGCCGCTAATGCACTTAGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCTCAAGTGATTTACATTTACCATCGCAATCCAATGCAGCAGAGGAGCCATTTCGGCAAGCAGACGTGCATAATCATCAAACTATATGTGGGGAACAATCCTCAAAAGCTCCTGAAGTTGAGTCTACTTTTTCGCGTATTAGCTGGAATCCAACTCATCAATTTTCATGGGATCCGACTCGTTGA 2136 0.4256 MMEELQQQQIQQPVIPVTGEVRFSENSIGVNASDVDFTMTDGGSYDTVLKKKRGRPPKGTLPPHPRLKKPKDEEDVCFICFDGGSLVLCDYRGCPKAYHPTCVKRDEEFFRLTEKWNCGWHLCSDCGKSCHYMCYTCTYSLCKGCTKKESDFVSVRGNKGLCGACKRTIMLIENSALGIKCEVDFDDKSSWEYLFKVYWMYLKGKLSLDYDEIHRAKNPWKSAVRASCKAQTPRKLHHLKVDNGYGSENSCVVDSNSPKNKKVKENIWTSFLDGAGHNAQDLSTTCELNGNTCVIKNQIGPNESAIDDATNPRFVRLREPVWHYQDPNGNVHGPVSMLFLCKLKGTERIPPDLRIWRIDEKQENSILLSDALSFKCSQKVSLPLNCEQQSLRASVTLETTTENSHGGLSNETRSANNQTVKQGEAEKVGDTYTPPNGTDESVKSNGGHTPSPGLTTQADGNISDGQSGHFERREASPKCDISCHDGPNVHPALPSIAFNEKLIDKPSDKVVEGHGNEQKSEVNGNLGSNRCSEDPSNSGQSDQKQSDNEENSGQSSGQNWRGPSVIHHPPMDASSWIASIFGDTDCPLVDDSVSDLLEQVAAKEKDGVLETPTAIEWDDELTEGAITDCFSFAANALSPMLDAGKGDALSSSSDLHLPSQSNAAEEPFRQADVHNHQTICGEQSSKAPEVESTFSRISWNPTHQFSWDPTR* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1067 711 MobiDBLite consensus disorder prediction 398 424 - -
Tpr2g1067 711 MobiDBLite consensus disorder prediction 398 461 - -
Tpr2g1067 711 MobiDBLite consensus disorder prediction 676 695 - -
Tpr2g1067 711 MobiDBLite consensus disorder prediction 518 561 - -
Tpr2g1067 711 Gene3D - 321 377 IPR035445 -
Tpr2g1067 711 SMART PHD_3 76 122 IPR001965 -
Tpr2g1067 711 PANTHER UNCHARACTERIZED 315 682 - -
Tpr2g1067 711 PANTHER UNCHARACTERIZED 24 269 - -
Tpr2g1067 711 PANTHER BNAC08G48800D PROTEIN 315 682 - -
Tpr2g1067 711 PANTHER BNAC08G48800D PROTEIN 24 269 - -
Tpr2g1067 711 MobiDBLite consensus disorder prediction 510 561 - -
Tpr2g1067 711 SUPERFAMILY GYF domain 313 373 IPR035445 -
Tpr2g1067 711 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 168 IPR013083 -
Tpr2g1067 711 ProSiteProfiles Zinc finger PHD-type profile. 74 140 IPR019787 -
Tpr2g1067 711 MobiDBLite consensus disorder prediction 434 461 - -
Tpr2g1067 711 SUPERFAMILY FYVE/PHD zinc finger 50 121 IPR011011 -
Tpr2g1067 711 ProSitePatterns Zinc finger PHD-type signature. 77 137 IPR019786 -
Tpr2g1067 711 CDD PHD5_NSD 76 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1067 Tpr-Chr2 12519218 12523424 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1067 74 148 PHD Transcription Factor Family AT4G14920 38.667 3.02e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1067 - - mtr:MTR_5g021450 967.992