Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1061 ATGCTTTACCAAACTCCCTATCCTCTTCTCTTTCAATTTCATCCCTTACCTTCTTCTTCTTCTTTCACCATTCCTCTCTCAACCATATCACAACCCCAACTTTCTCTCACAAAGGCTTCAAAAACAGAAATGGAGTGCGTTGAAACAGCGTTGAAAACAAGTTTAAGGAAAGACATAACTCCTCAAACATTTGTTGATGAGCTTACGGTACTAAATGCACAAAATGGAACAACCTCTGACGATTTTTTCGTTGATGACCTCCTTGATTTTTCTCACGTTGAAGAACAACAACAAGACGAAGAACAACAAAACCAACAACAACAACAAGACTCTGTTTTTGTCTCCCTCAAACAAACCCATGAAATTTCAAACCTTAACAACAGCAACAGCAACAGTTTTTCTCTCAAAAATGATTATGCTTCTCTACCCACTAGCGACCTCAACGTCCCGAGTGATGATGTAGCAGATGATTTAGAATGGCTTTCACATTTTGTTGAAGATTCTGATTCTTTCTCGGAATTTTCTGCTGTTATGCCGGTTGTAACTTTAACAACAACGGAGAAAAACCCAAAGGGTGTTGTGGTTTCTGAGCCCAAGCCCAAGAATGAAAGCCCGGGCCCGGTTGTTACTACTTTCAAAACTCCGGTTCAGACAAAAGCAAGAAGCAAAAGAACAAGAAACGGTGTTCGGGTTTGGCCATTCGGGTCAAATACTTTAACCGAATCTTCTTCAAGCTCCACAACTTCATCTTCAACTTCTTCTTCATCTCCAACTAGTCCCTTGTTGATTTACACCAACTTGGTCCAGAAATTTGACTCGGCTCCGGCGAAGAAACCGAAGAAAATGACGGGTTTTAACGGGTCGGGTCATGGCACGGTGGTTGTAACGCCGGCGGCACCGCGACGGTGCAGTCATTGCGGTGTAACTAAGACTCCTCAGTGGCGAACTGGTCCTCTTGGTGCAAAAACGCTTTGTAATGCATGTGGGGTCCGTTTTAAATCGGGTCGGTTATTACCGGAATATCGACCCGCTTGTAGTCCTACATTTTCAAGTGAATTGCACTCTAACCACCACCGGAAAGTTCTTGAAATGCGGCGGAAGAAGGAGGTTGTTGATGGTGTTGAAATTGAAACCGGTTTGTCCCCTTCTCCGGTTGTTCCAAGTTTTTGA 1170 0.4342 MLYQTPYPLLFQFHPLPSSSSFTIPLSTISQPQLSLTKASKTEMECVETALKTSLRKDITPQTFVDELTVLNAQNGTTSDDFFVDDLLDFSHVEEQQQDEEQQNQQQQQDSVFVSLKQTHEISNLNNSNSNSFSLKNDYASLPTSDLNVPSDDVADDLEWLSHFVEDSDSFSEFSAVMPVVTLTTTEKNPKGVVVSEPKPKNESPGPVVTTFKTPVQTKARSKRTRNGVRVWPFGSNTLTESSSSSTTSSSTSSSSPTSPLLIYTNLVQKFDSAPAKKPKKMTGFNGSGHGTVVVTPAAPRRCSHCGVTKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEVVDGVEIETGLSPSPVVPSF* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1061 389 CDD ZnF_GATA 302 350 IPR000679 GO:0006355|GO:0043565
Tpr2g1061 389 SMART GATA_3 297 351 IPR000679 GO:0006355|GO:0043565
Tpr2g1061 389 Gene3D - 296 370 IPR013088 GO:0006355|GO:0008270
Tpr2g1061 389 PANTHER GATA TRANSCRIPTION FACTOR 44 373 - -
Tpr2g1061 389 ProSiteProfiles GATA-type zinc finger domain profile. 297 333 IPR000679 GO:0006355|GO:0043565
Tpr2g1061 389 Coils Coil 90 110 - -
Tpr2g1061 389 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 296 359 - -
Tpr2g1061 389 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
Tpr2g1061 389 MobiDBLite consensus disorder prediction 231 256 - -
Tpr2g1061 389 MobiDBLite consensus disorder prediction 215 256 - -
Tpr2g1061 389 Pfam GATA zinc finger 303 337 IPR000679 GO:0006355|GO:0043565
Tpr2g1061 389 PANTHER GATA TRANSCRIPTION FACTOR 44 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1061 Tpr-Chr2 12462194 12463890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1061 48 389 C2C2-Gata Transcription Factor Family AT5G66320 46.685 1.72e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr2g1061 GATA 1.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1061 - - var:108335072 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1061 2 12462194 12463890 Tpr4g4239 4 49525524 49527085 ECH
Tpr2g1061 2 12462194 12463890 Tpr2g1061 2 12462194 12463890 ECH
Tpr2g1061 2 12462194 12463890 Tpr4g4239 4 49525524 49527085 PCT