Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1040 ATGGCAGGTTTATTTTCATTAGGAAGAAGCGAAGAACAAAATCAACAGAATAACAATAACAATAATCCAGTAACAGAATTCTGGTATAATAATAACAAAAATAATCAAGATTCAGTTTCTGCATACCGTGGTGGTTTTGAGATTTGGAACGAACAGCCACCTCAGCATCAACAACAGTTTTTTCCTCCACAGCAAGATCTTTACGCCGCCGCCTCTGCTGGTGTTGTGTTAGGAGTTGGGTCAAGTAGGGTTTGTTCTTCAGATGAGAATAGATCTGCGGTTTTTGTGGCGTCAGGAAGTGGTGGAGGAGGAATAAGTTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTCCTCATATTAGATGTAGGACTTGTTGCAAGAGTAGAGGTTTTGATTGTCAAACTCATGTTAAAAGTACTTGGGTTCCGGCGGCGAGACGCCGCGAACGACAGCAACAACAACCACAACAACAACCACATGGAGATGGAGAAAGAGATCTTAATAATTCTTCTTTAGCTTGCACTCGTTTACCTATAAACCCTTCACTCACTGTCTCTGCAACAGGGTTACTGGATGAGGTGAATTTTCCGGCAGTGGTGAGTACTCCGGCAGAATTCAGGTGTGTTCGAGTTTGTTCGGTTGATGAGTCTGAAGAAGAGTATGCATATTCAACTGCTGTGAACATTGGAGGACATGTTTTCAGAGGAATTTTGTATGATTATGGTCCAGATCATGGGAGTAGTAGTTATAACATGCCTGCCGGAAATGCCTCGTCTAGTCGTGGTGGTGGAGTGCCGGTTCAGCCGTTAGAGCTTATATCTGGTGTCCCCGCTGGTGTTGGTGTTGGGGCAATTGTTGATCCTTCTTCTTTGTATCCAGCTCCACTTAACACCTTCATGCCTCCTAGTGGTACGCAATTCTTCCCCCACCCAAGATCATCTTGA 948 0.4378 MAGLFSLGRSEEQNQQNNNNNNPVTEFWYNNNKNNQDSVSAYRGGFEIWNEQPPQHQQQFFPPQQDLYAAASAGVVLGVGSSRVCSSDENRSAVFVASGSGGGGISCQDCGNQAKKDCPHIRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQPQQQPHGDGERDLNNSSLACTRLPINPSLTVSATGLLDEVNFPAVVSTPAEFRCVRVCSVDESEEEYAYSTAVNIGGHVFRGILYDYGPDHGSSSYNMPAGNASSSRGGGVPVQPLELISGVPAGVGVGAIVDPSSLYPAPLNTFMPPSGTQFFPHPRSS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1040 315 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 314 - -
Tpr2g1040 315 MobiDBLite consensus disorder prediction 1 25 - -
Tpr2g1040 315 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 314 IPR007818 GO:0003700|GO:0006355
Tpr2g1040 315 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 197 244 IPR006511 -
Tpr2g1040 315 MobiDBLite consensus disorder prediction 145 168 - -
Tpr2g1040 315 MobiDBLite consensus disorder prediction 8 25 - -
Tpr2g1040 315 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 106 148 IPR006510 -
Tpr2g1040 315 Pfam Domain of unknown function (DUF702) 104 245 - -
Tpr2g1040 315 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1040 Tpr-Chr2 12240345 12242811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1040 1 301 C2H2 Transcription Factor Family AT5G66350 46.377 3.01e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tpr2g1040 DUF702 9.9e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1040 - - gmx:100797973 290.426