Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1034 ATGGCGATTTCACATTCACACATCAACATGATATCTCCATCGATGAACCAGTTTTCTTCCTTGTTTACAACAAACATTGGTTCACCATCATCATGGTTTGCTATATATGCTTCCTTCTCCTCATTTATGATGATTTTAAGAACAGCAATCAATGATCTCGTACCCTTAAGGCTTAGAACTTTCATCATCTCAAAGCTACAATCTTTTTTCATAAATTACCAACCCTACAATCAACAAGTCTCACTTCAAGTCGATCAACTTTGGGATGGATATACCAACAATATTCTTTACAATGCAGCCAAAGAGTATCTTCCTACTAAAATATCCAACACTTACAAATCCCTCAAAATTGGGAAACTATTCGATCAAAACAACATACTAGTAGCTTTTGATGGAAAGCAAGCAGTGGTGGATGAATTTGAAGGTATCGAGATTAAATGGATAATTATCGAAAAAACCAAAAATCGTCCTTTAGAAGATCCCAGTAATGAACTATATTATGATGAAATGTATGAGAATATGCCAAGAGAATATGAATCTCAGGGGAATAGATTTGTGTTAAGTTTTGATGAGAAGCATAGAGATAAAGTAATGGAGAAGTATATTCCACATGTTTTAAGTACTTATGAAGCTATAATCTCTGAGCGTAGGAGTCTACAGATCCATTCAAGTCAAAGTGGTTGTTGGATGCGAAGTAATTTTAATCATCCAGCTTCATTTGATTCACTTGCTTTGGATCCTGATCTAAGGAAAACTGTAACAGATGATTTAGATAGATTTTTGAGGAGGAAAAAGATCTATAAGAAAGTTGGTAAACCTTGGAAACGTGGTTATCTATTGTATGGTCCACCAGGAACAGGAAAATCTAGTCTTATTGTTGCTATAGCAAAATATTTGAAATTTGATGTCTATGATTTGGATCTAAGTTCTGTGCATTCTAACTTTGAACTCACTACAATGTTGAGAGGGACATCTAACCGATCCATCATCGTCATTGAAGACATTGACTGCAACAAAGAGGTGCTCGATCGATCAAAATTTGCGGACATGTATCCAGACATGGATTTCCTGGACCGGGTAGCTAAGGGTGGCAACTCTGCCAATTCTGGAAAGTTTACTCTATCAGGACTTCTTAACTATATGGATGGTTTGTGGGCATGTTGCGGGGAGGAACGAATTTTGATATTTACTACGAACCATAAAGACAAAATAGATCCAGCATTGTTGCGCCCTGGTCGCATGGACATGCATATTGAGTTGTCTTATCTTAAAGCCAAGCCATTCAGAATCTTAGCTTCTAATTATTTGGACATTGAAGAACATCACCACCCTCTCTTAGAACAAGTTGATGAACTATTGGATAAAATGGATGTCACCCCTGCATTAGTGGCAGAGCATTTGTTGAGAGGTGAAGATGCTGATGTTGCTCTCAAAACACTTATTAAACTTCTTCAAGGAATGGACATTGAAGACTATAGTCAGCAAGTATAG 1491 0.3682 MAISHSHINMISPSMNQFSSLFTTNIGSPSSWFAIYASFSSFMMILRTAINDLVPLRLRTFIISKLQSFFINYQPYNQQVSLQVDQLWDGYTNNILYNAAKEYLPTKISNTYKSLKIGKLFDQNNILVAFDGKQAVVDEFEGIEIKWIIIEKTKNRPLEDPSNELYYDEMYENMPREYESQGNRFVLSFDEKHRDKVMEKYIPHVLSTYEAIISERRSLQIHSSQSGCWMRSNFNHPASFDSLALDPDLRKTVTDDLDRFLRRKKIYKKVGKPWKRGYLLYGPPGTGKSSLIVAIAKYLKFDVYDLDLSSVHSNFELTTMLRGTSNRSIIVIEDIDCNKEVLDRSKFADMYPDMDFLDRVAKGGNSANSGKFTLSGLLNYMDGLWACCGEERILIFTTNHKDKIDPALLRPGRMDMHIELSYLKAKPFRILASNYLDIEEHHHPLLEQVDELLDKMDVTPALVAEHLLRGEDADVALKTLIKLLQGMDIEDYSQQV* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1034 496 PANTHER BCS1 AAA-TYPE ATPASE 26 492 - -
Tpr2g1034 496 Gene3D - 230 418 IPR027417 -
Tpr2g1034 496 SMART AAA_5 274 424 IPR003593 -
Tpr2g1034 496 Gene3D - 419 492 - -
Tpr2g1034 496 Pfam ATPase family associated with various cellular activities (AAA) 279 421 IPR003959 GO:0005524|GO:0016887
Tpr2g1034 496 CDD AAA 275 422 - -
Tpr2g1034 496 ProSitePatterns AAA-protein family signature. 392 410 IPR003960 GO:0005524|GO:0016887
Tpr2g1034 496 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 26 492 - -
Tpr2g1034 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 470 IPR027417 -
Tpr2g1034 496 Pfam Domain associated at C-terminal with AAA 55 149 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1034 Tpr-Chr2 12199891 12202354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1034 276 472 Calmodulin-binding Proteins AT3G56690 28.571 2.53e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1034 - K08900 gmx:100787726 511.146