Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1015 ATGTCAAATCCAAACGATGGTAATGCTGAAGTAGATATTCCACCTGAATTGCTGATAACAAACTTTGACGATCCTATCGGTGCTATTGTGCAAAGTACGTATCCAAATCTTCTTTCACAATACCAAAATGGACAGTTTGTGCAATCAAGAGCTATTTTGGCTTCAACTGTTGAGGCTGTTGATCAAATAAATGATTATGTACTTAAGATACTTCCAGGTGAAGAAGGGGTGTATTATAGTGCCGACTCTATTGATAGTTCAGAGATCAATGATGCACAAGCATTCAACATGATTCCCCCTGACATGATTCCTCCTGAATTTCTAAACATTCTCGAAACATCTGACATACCAAATCATAAACTCACTCTCAAGGTTGGGACGACTGTAACACTTCTAACAGATTTAGACCCAGCTGGGGGTTTATATAATGGTACTAGATTAATTGTTACAAGACTAGCAGCTGTAGGTAAATTTGTACTTGTGGCCAAAAGATTGTCAGGAGAAAACATTGATGAGCCTGTATTTCTTTTACGAGTGGATATGTCTCCTTCACGGTCGCCGATTCCTTACAAGTTAGTTAGAAGACAATACCCAATTAGTGTCTCATTTGCAATGGCAATTGAGAAATCTCAAGGTCAATCCCTAGACAGTGTGGGCTTATATATACCTAGATCAGTGATAAGTCATGATCAGCTGAAAGTCGCATTCTCTAGTGTCAAAAGCAAAAATGGACTGAAGATTCTAATTGATGACAAGGACAAAGAAGCAATGTCTGATACTATAAATGATATAAATGCAGTCTTCAAAGAGGTTTTCAAAAACCTTAACAAGATTAAGGAAGTCTTTCTCAACGATCTCTCCGGTGTTGCTCGCAAGTCCACCGTCAAAGTCAGAATAACTAGATTGTGGGACACCTGGAACATAAACAAAAGGAAGGGCATGATTAGTATAGACATGGTACTAATGGACGAAAAGCACAATTACATACATGGCACAATACCAAGTAGGTTTGCACACTTATTCAAGGATATCTTGCAAGAGGGAAAGATATATGTGATTGATACTTTCACAGTCTTAAAAAATAAAGAAACATATATTATAGTTGAAAATAATACTTCCATGCTACAATTCTCTGGATCAACAAACTTTACACCTCAAGAATTTGATGATGGGAAAATCCCACGCTATGTTTTTGAATTTGTTCATTTTGAAGAGTTACACAAGCGTGATAACCAGGCCCACGCAGATGTGATTGGGGTTATTATTAATATAACTCCGATTGAAGAGAGGACATCTGTTAACGGAAAGACTGATATTATGTCACTCTATTTAAGGAATGAAAGTGGAGACATATTGAAAGTCACATTGTGGGATGGCTATGTTTCAGTGTTTGATAAAAAATTGAAAAAATACAAGCATGCTACTATTGAACCAAACGTGGCAATATTCACATCCATCTTGGTTAAACAATATAAAGGTGAGTTTTTTGTCCAATCTTCAAGATCCACAACAATTTATATCAACATAGACATTCCAGAAGCTATTGAGCTCGCTCAATCATCCAAAGTTGCCAATGTTATGGATGAAAGTGTAAATCTTCCTCTTCTTGTTGTCCATCCTAAAGTTAACAAAGTAAAGACTATATCTGAAATTTTGGACATTGCAGCTTCAGGGAGTAATATGAATGATGTCTACCATTGTGCTGCAACAGTCGACGACATTTTGGTGAAAAATGGATGGTATTATGTTTCATGTCCTGACTGTAGAAAAACTGTTTCTCCAACTGAAACAGGTTTTAAGTGTGACCATTGCAAGGTGGATATAGCATATCCCAAGACTAGGTTCCGTCTAGAGCTTCAGGTGAAAGACCGTACCGCTACAACCATATTTGTATTGTTTGATGAAGTTGCTGAGCAGGTGGTCCAAGTTAAGCTAGGTGACCTCACCTCAAATTTAGAAAATGGAAATGGGGGAGACTCGGAACTGCCTGGACAACTCCTTAATATCATCGGTTCCACGCACGTTTTCCAAGTTAAAATGAGTTCTTACTTTGAAAGTCTTGGAAGACAAAGTTTTACGGCAAATACAATTTTGAAGCTGAATGTCAAGGTAGAACAGGAAGACACCGTGGCCAATATATGTTCTTCCTCAAGTGGGCCTTCCCCAATTTTGGAACATAAGAGGAGAAAATTAATATTGCATTCTTTGCCGGACTCGGGTGATATGGACCAAAAGGATATTGTGGAAGATTTGGATGACTGA 2262 0.378 MSNPNDGNAEVDIPPELLITNFDDPIGAIVQSTYPNLLSQYQNGQFVQSRAILASTVEAVDQINDYVLKILPGEEGVYYSADSIDSSEINDAQAFNMIPPDMIPPEFLNILETSDIPNHKLTLKVGTTVTLLTDLDPAGGLYNGTRLIVTRLAAVGKFVLVAKRLSGENIDEPVFLLRVDMSPSRSPIPYKLVRRQYPISVSFAMAIEKSQGQSLDSVGLYIPRSVISHDQLKVAFSSVKSKNGLKILIDDKDKEAMSDTINDINAVFKEVFKNLNKIKEVFLNDLSGVARKSTVKVRITRLWDTWNINKRKGMISIDMVLMDEKHNYIHGTIPSRFAHLFKDILQEGKIYVIDTFTVLKNKETYIIVENNTSMLQFSGSTNFTPQEFDDGKIPRYVFEFVHFEELHKRDNQAHADVIGVIINITPIEERTSVNGKTDIMSLYLRNESGDILKVTLWDGYVSVFDKKLKKYKHATIEPNVAIFTSILVKQYKGEFFVQSSRSTTIYINIDIPEAIELAQSSKVANVMDESVNLPLLVVHPKVNKVKTISEILDIAASGSNMNDVYHCAATVDDILVKNGWYYVSCPDCRKTVSPTETGFKCDHCKVDIAYPKTRFRLELQVKDRTATTIFVLFDEVAEQVVQVKLGDLTSNLENGNGGDSELPGQLLNIIGSTHVFQVKMSSYFESLGRQSFTANTILKLNVKVEQEDTVANICSSSSGPSPILEHKRRKLILHSLPDSGDMDQKDIVEDLDD* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1015 753 CDD RPA1_DBD_A_like 294 381 - -
Tpr2g1015 753 SUPERFAMILY Nucleic acid-binding proteins 398 521 IPR012340 -
Tpr2g1015 753 Gene3D - 539 715 IPR012340 -
Tpr2g1015 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 264 IPR027417 -
Tpr2g1015 753 Pfam PIF1-like helicase 3 152 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tpr2g1015 753 PANTHER ATP-DEPENDENT DNA HELICASE 2 275 - -
Tpr2g1015 753 Gene3D - 280 385 IPR012340 -
Tpr2g1015 753 PANTHER DNA HELICASE-RELATED 2 275 - -
Tpr2g1015 753 Gene3D - 392 527 IPR012340 -
Tpr2g1015 753 SUPERFAMILY Nucleic acid-binding proteins 544 708 IPR012340 -
Tpr2g1015 753 CDD RPA1_DBD_B_like 416 522 - -
Tpr2g1015 753 Pfam Domain of unknown function DUF223 319 385 IPR003871 -
Tpr2g1015 753 CDD RPA1_DBD_C 548 713 IPR013955 -
Tpr2g1015 753 Pfam Replication factor-A C terminal domain 566 707 IPR013955 -
Tpr2g1015 753 SUPERFAMILY Nucleic acid-binding proteins 281 380 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1015 Tpr-Chr2 12044688 12049478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1015 294 648 Core DNA Replication Machinery Family AT5G45400 27.151 5.66e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1015 - - mtr:MTR_4g070090 514.612