Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0995 ATGTCGTTGAGAAGTATAGTGCGGGAACTCAAGGAAATGAGGGATGGGATTGGTAATACATCGACGCGGGGTGCAGGAAGTAGGGTTTCACAGCGTCGGACGAAGTCGCACATAGTTCCTGATATGACTTTAACATCACTTGAACCTATTCAGCAGGGACAATGGGCTAATATACCATCTGAATTGCTTCTTGATATAATTCGGAGGGTAGAAGAGACTGAGACTTCTTGGCCTGCTCGTGCTGTTGTTGTTTCTTGTGCTTCCGTGTGTAAATCTTGGAGGGCCGTTACAAAAGAGATTGTCCAGACTCCCGAACAGTGTGGACGGTTGACATTTCCTATCTCATTAAAGCAGCCGGGTCCTCGTGATTCTCCGATACAGTGCTACATCAGAAGGGACAGAGAAACTTCTGCATATCTGTTGTACTATGGATTGGTGCCATCGGAAAATGAGACCGATAAGCTGTTATTAGTTGCCAAAAAGATAAGGAGGGCAACCGGCACAGACTTCATCATATCTTTGGTTGCAGATGATTTTTCCCGATCCAGCAATACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATATATGACAGCCAACCTCCACATGGAGCTGGAATTCCACCAAAAAGTACTAGGTCTAGTAGGAGATTTCATTCTAGGCAGGTGTCTCCAAGAGTTCCAGCATGTAACTATATCGTTAGCACCATTACCTATGAGCTGAATGTTCTCCGCACGAGAGGGCCAAGAAGAATGAACTGCATCATGAACTCGATACCTGTCTCAGCTGTTCAGGAAGGGGGCACTGCCCCAACTCCTACATCTTTTCCTGAAATTACCGACGAGCATTTTTGTTCTGCGTCAGCACCAGCACTAAAAGGTAAAGGTCCAGTTGGAGATTTAAGCAATTCAACCCTCCCAGTCCAAGAGATGCCGGTACAGAGCCAAGGCCCAGTTGAGTCTCTAGTACTTAAAAACAAGTCTCCAAGATGGCATGAGCAGTTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACGGTGGCTTCGGTCAAGAACTTCCAACTTGTGGCTGCTGTTGAGCCATCTCATAATGTTTCTGCTGCGGAGCAAGAAAAGGTTATCTTGCAGTTTGGAAAGATTGGAAAAGATATATTTACTATGGATTACCGTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATATGCTTGAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1260 0.4524 MSLRSIVRELKEMRDGIGNTSTRGAGSRVSQRRTKSHIVPDMTLTSLEPIQQGQWANIPSELLLDIIRRVEETETSWPARAVVVSCASVCKSWRAVTKEIVQTPEQCGRLTFPISLKQPGPRDSPIQCYIRRDRETSAYLLYYGLVPSENETDKLLLVAKKIRRATGTDFIISLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAGIPPKSTRSSRRFHSRQVSPRVPACNYIVSTITYELNVLRTRGPRRMNCIMNSIPVSAVQEGGTAPTPTSFPEITDEHFCSASAPALKGKGPVGDLSNSTLPVQEMPVQSQGPVESLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0995 419 Pfam Tub family 116 414 IPR000007 -
Tpr2g0995 419 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Tpr2g0995 419 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Tpr2g0995 419 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Tpr2g0995 419 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Tpr2g0995 419 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Tpr2g0995 419 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Tpr2g0995 419 PRINTS Tubby superfamily signature 376 395 IPR000007 -
Tpr2g0995 419 PRINTS Tubby superfamily signature 397 419 IPR000007 -
Tpr2g0995 419 Gene3D Tubby Protein; Chain A 113 419 IPR025659 -
Tpr2g0995 419 MobiDBLite consensus disorder prediction 20 34 - -
Tpr2g0995 419 PANTHER TUBBY-RELATED 1 419 - -
Tpr2g0995 419 MobiDBLite consensus disorder prediction 14 34 - -
Tpr2g0995 419 SUPERFAMILY Tubby C-terminal domain-like 104 419 IPR025659 -
Tpr2g0995 419 Pfam F-box domain 55 102 IPR001810 GO:0005515
Tpr2g0995 419 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Tpr2g0995 419 Gene3D - 48 104 - -
Tpr2g0995 419 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 419 - -
Tpr2g0995 419 ProSitePatterns Tub family signature 2. 404 419 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0995 Tpr-Chr2 11911588 11915186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0995 1 419 TUB Transcription Factor Family AT2G18280 62.381 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr2g0995 Tub 3e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0995 K19600 - gmx:100778290 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0995 2 11911588 11915186 Tpr2g0995 2 11911588 11915186 ECH
Tpr2g0995 2 11911588 11915186 Tpr4g4183 4 48853832 48857149 ECH
Tpr2g0995 2 11911588 11915186 Tpr4g4183 4 48853832 48857149 PCT