Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0994 ATGAGAACAACTAGTGGTGAAAACGTGGAGACTTTACTAAATACCCGCTCCTTTCAGGCACATAGTAAAATATGCATACAACTGATGAATATAGTCGAAAGCATCATGAGGATACTTCCAAACATAGAGGAAGCAAGGCCTAGATGCTCATCCGGAATAGAGTCTCTATGTTCGCTGCACAACTCAATTGAGAAAGCCAGACTACTTCTGCAACATTGTTCTGAATGCAGCAAACTCTACCTGGCTGTGACAGGGGATACAGTACTTACAAGATGCCTAAAGGCAAAAAAGTCATTAGAACAAAGCTTAATTCCCATTCAGGGTATGGTTCCAGTTCTGTTGGCTGTAGAGGTTTCTAGAATAATTGATGATCTTGAGTGTGCTACATTTGTTCTGGACTATGCCGAAGAAGAGGCTGGGAAAGTTTTAACGGAACTGCTTCAGCATGGTAATTCAAATTCAGATTCAGTGGAAGATTTTGAACTTAAAGCACTTCAGTTTGCAGCACCAAGACTGAATATAACATCACAAAAGGCCTTATTATTCGAGAGACGGGCGATCAAGAAGTTGCTAGATAAAATTGGACAAAGTGACCTGAAAAAGTGGAAGATCTTGAGATATCTTATGTATCTATTGAAAAAGCATGGAAACTACATGGTGGCGGGAGAACACATTGAGAATTTTTATTCTCGAAGAGAAGAAATTGCAAGGGATAACTCTAGTCGCAATTCTCTACGAAGCAATCGAGTTGAGTCGGAACGTAGCATGAACTTTGATCAGAATAGAACTCACATGAATCAGTCGGATAGAGTGACACCGCCTGAGGAATATAAGTGTCCAATATCCTTAAGATTGATGTATGATCCTGTTATCATTGCTTCTGGAGTTACGTATGAAAGAATGTGGATAAGAAAGTGGATTAATGAAGGTAAAACTACATGTCCAAAAACAAAAATGGAACTAACTCATACGACATTGACTCCAAATGTTGCCATGAAGGACATAATATCAAAGTGGTGCAAAAGTAACGGTGTCTCCATTCCTGATCCAAGTAGACATACAGAAGATTTTCACTTAATGGATGCTTCAATCACCTCTATCAAGAGTTTGGGAAGTTATTTCAATGATTTGAACTTGCCAATGGATTTTAGCAACATGTCTCTTGGATCATTGGATACTAGTTTTAATTCAGATGTGTCACGAGTTCAGCCTAATCATGACTTGAATTTGATGATGGCCAGGAGTAGTGAAAACTCTCAGTCTCACATGCAAAGAGCTCATGTACCAGAGATACATGATTCAGATTTGATGCTCTTGCCTACACTTCATGATCTTCAATGGGATTCTCAATGTAAGGTCATTGAAGATTTGAAAGATCATATGAAAAGTAATAGCCAAGCTATTTTGTCTGTGTCAGCTGAAAATTTAGTTGAACCAGTAGTCAGATTTTTGTGCAATGCATATGATCTGCAAGACGCAAAAGCGCTGAGAGACGGAACTCAGCTGCTGTTGGAATTTGTGAACAACTGCAGAAATGGTATGGCTGACATAAGTGAAGATACATTCATAAAGTTGGCAAATCTTCTTGATTCAGAAGTGATAGGAGAAGTACTTGACATAATGGAAGAACTTTCTGGAGATGGAAATAGTAAAACCAAAATTGCAGCATCGAGTGCACTCACTTCTGTCTTAAAGTTGCTTGATTCTGATAGCAAAGAGTTCCAACAAAAAGCTATAAGAACAATCTACAATTTGTCCTTCAATAGTGAAGTTTGTCCACGCATGGTATCTCTCAATTGCATCCAAAAATTGCTTCCATTTTTCAAAGACAGATCGGTTTTGCGATACTGCATATATATATTGAAAAACATGTGTGACACTGAAGAGGGTAGAAACTCAATTGTTGAAACTAGGGGATGCATATCTTCTATTGCTGAAATACTTGATACCGGAAGTAATGAGGAGCAACAACATGCACTTTCTGTTCTACAATCTTTATGTTCATGCTCTCAAAGTGTGGATTATTGTAAGTTGATTTTGGATGAGGAAGAGAATATCATCACTACTCTTTTCTATATCTCACAGAATGGAAATGATAAAGGAAAGGAAAGTGCCTTGGAATTGATTCAACTTTTGAAAGATGCTAAAGATGTTGAGAATGAAGATAATAGATCCTCTCAACCAATTACCAACAACACTTCTGGAGAATCCAGCAGTCACACTGAAGAAAATAGATCATCAAGAAAATCGCCATTTCTGAAGAAACTAGGATTGTTCTCAAAAAACAAAAAGTGA 2295 0.3778 MRTTSGENVETLLNTRSFQAHSKICIQLMNIVESIMRILPNIEEARPRCSSGIESLCSLHNSIEKARLLLQHCSECSKLYLAVTGDTVLTRCLKAKKSLEQSLIPIQGMVPVLLAVEVSRIIDDLECATFVLDYAEEEAGKVLTELLQHGNSNSDSVEDFELKALQFAAPRLNITSQKALLFERRAIKKLLDKIGQSDLKKWKILRYLMYLLKKHGNYMVAGEHIENFYSRREEIARDNSSRNSLRSNRVESERSMNFDQNRTHMNQSDRVTPPEEYKCPISLRLMYDPVIIASGVTYERMWIRKWINEGKTTCPKTKMELTHTTLTPNVAMKDIISKWCKSNGVSIPDPSRHTEDFHLMDASITSIKSLGSYFNDLNLPMDFSNMSLGSLDTSFNSDVSRVQPNHDLNLMMARSSENSQSHMQRAHVPEIHDSDLMLLPTLHDLQWDSQCKVIEDLKDHMKSNSQAILSVSAENLVEPVVRFLCNAYDLQDAKALRDGTQLLLEFVNNCRNGMADISEDTFIKLANLLDSEVIGEVLDIMEELSGDGNSKTKIAASSALTSVLKLLDSDSKEFQQKAIRTIYNLSFNSEVCPRMVSLNCIQKLLPFFKDRSVLRYCIYILKNMCDTEEGRNSIVETRGCISSIAEILDTGSNEEQQHALSVLQSLCSCSQSVDYCKLILDEEENIITTLFYISQNGNDKGKESALELIQLLKDAKDVENEDNRSSQPITNNTSGESSSHTEENRSSRKSPFLKKLGLFSKNKK* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0994 764 CDD RING-Ubox_PUB 277 318 IPR045210 -
Tpr2g0994 764 MobiDBLite consensus disorder prediction 717 764 - -
Tpr2g0994 764 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Tpr2g0994 764 SUPERFAMILY ARM repeat 438 712 IPR016024 -
Tpr2g0994 764 MobiDBLite consensus disorder prediction 724 740 - -
Tpr2g0994 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 723 - -
Tpr2g0994 764 SMART arm_5 588 626 IPR000225 GO:0005515
Tpr2g0994 764 SMART arm_5 547 587 IPR000225 GO:0005515
Tpr2g0994 764 SMART arm_5 627 668 IPR000225 GO:0005515
Tpr2g0994 764 PANTHER U BOX DOMAIN-CONTAINING 2 723 - -
Tpr2g0994 764 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Tpr2g0994 764 Gene3D - 437 720 IPR011989 -
Tpr2g0994 764 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Tpr2g0994 764 SUPERFAMILY RING/U-box 268 350 - -
Tpr2g0994 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 346 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0994 Tpr-Chr2 11903400 11908308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0994 16 762 U-box Gene Family AT4G36550 35.724 5.05e-142 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0994 - - mtr:MTR_5g020570 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0994 2 11903400 11908308 Tpr2g0994 2 11903400 11908308 ECH
Tpr2g0994 2 11903400 11908308 Tpr4g4181 4 48835956 48842206 ECH
Tpr2g0994 2 11903400 11908308 Tpr4g4181 4 48835956 48842206 PCT