Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0984 ATGATGCATCATCTTTCTTCTTCATCACAAGGACATCATGTGATGGGACACTGTACATGTGGTATGTTTCATGGACAAAACAACAATTCTTCTTCTTCATTCTCAATGTTATTCTCTAAACCTTATGATGAAACTGTTGATAATACATATTGTTTCACTTCTTCTTCTTCTTCAACTTCTTCTGTGGATTGTACTCTTTCTCTTGGAACACCATCCACTCGTTTATGTGAAGATGAAGAGAAAAGAAACCGTTGTTCTGTTAAAAACTTTTGCTGGGATTTACTTACTCCTAAACAGTACAACAGTGTTCAGTCTCAAACAAAGGTAACACGTGGAAATGGAAACAACAATAATAATAACAACAATGATTCTCTTCTTGCTCGTAGATGTGCTAACTGTGACACTACTTCTACACCTCTTTGGAGAAATGGCCCTCGTGGCCCAAAGTCATTGTGCAATGCTTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCTACCGCAGCGGCCACCACACCACCGACAGCCGCAACCATCGGTGTAATGGAACCTACTCCAATGTACAACAACAACAACAACTCATGGTATGTACATCCACAAAACCAAAAGATGCAATGCTTCTCTCCGGCAATGAGTAACGAGTTTCGCTTCATTGATGAAACTGATCGTGATTCTGAAAATGGCATTCCCTTTCTCTCTTGGAGACTCAATGTCACTGATCGAACAAGCTTTGTTCATGACTTTACTAGATGA 753 0.3984 MMHHLSSSSQGHHVMGHCTCGMFHGQNNNSSSSFSMLFSKPYDETVDNTYCFTSSSSSTSSVDCTLSLGTPSTRLCEDEEKRNRCSVKNFCWDLLTPKQYNSVQSQTKVTRGNGNNNNNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRATAAATTPPTAATIGVMEPTPMYNNNNNSWYVHPQNQKMQCFSPAMSNEFRFIDETDRDSENGIPFLSWRLNVTDRTSFVHDFTR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0984 250 SMART GATA_3 124 174 IPR000679 GO:0006355|GO:0043565
Tpr2g0984 250 CDD ZnF_GATA 129 161 IPR000679 GO:0006355|GO:0043565
Tpr2g0984 250 ProSiteProfiles GATA-type zinc finger domain profile. 124 160 IPR000679 GO:0006355|GO:0043565
Tpr2g0984 250 Gene3D - 126 203 IPR013088 GO:0006355|GO:0008270
Tpr2g0984 250 PANTHER GATA TRANSCRIPTION FACTOR 18 2 249 IPR044272 GO:0003700|GO:0009908
Tpr2g0984 250 PANTHER GATA TRANSCRIPTION FACTOR 18 2 249 - -
Tpr2g0984 250 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 127 171 - -
Tpr2g0984 250 Pfam GATA zinc finger 130 164 IPR000679 GO:0006355|GO:0043565
Tpr2g0984 250 ProSitePatterns GATA-type zinc finger domain. 130 155 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0984 Tpr-Chr2 11792903 11795101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0984 5 250 C2C2-Gata Transcription Factor Family AT3G50870 43.648 3.16e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr2g0984 GATA 6.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0984 - - gmx:100790571 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0984 2 11792903 11795101 Tpr2g0984 2 11792903 11795101 ECH
Tpr2g0984 2 11792903 11795101 Tpr4g4172 4 48730292 48731890 PCT