Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0974 ATGGATGACAAGAACAATGTGATGAACGTTGATCCTCCTGTAGAGTCACCAACTTCGGTTCTAGAAGAAGAGGAAGTAGAAGTGAAATCGGAGGAAGAGGTGGTTGCAGATGATGGGTCTTCTTCGCTTGTGTCGAAATTAATGGCGGAGGAGGAAAAGAAGTTACTTGAAGCTCGTGCTAAGGAAGAAGAGGAACCGTTGGAGGCGCCGAATCTTGATGATACACAGTTTAATAAGTTGGATGAACTCTTGACACAGACTAAACTCTACTCAGAGTTTCTTTTGGAGAAAATGGACGATATCACAATGAATCCGAGTGAACAAGAGAAGGAGGACGAGGAAGAGAGCCAGCCGAGTGTGAAAAAGAAGGGTCGTGGAGCAAAACGAAAGGCGGCTAAACAATGCAATACGAGGAAAGCTAAAAAGGCAGTTGAAGCCATGATTACAAGATCTAAAGAAAATCTGAAGACTGAAGATGTGAATTTGACTGAAGAAGAAAGAACTGAGAAAGAGCAGAAGGATCTGATGCCTTTACTAACTGGTGGAAAATTAAAGTCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTAGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGCTTTATTTCTCATCTAAAATCAAGAGGATTGGATGGGCCATATATGATAATTGCTCCTCTATCAACCCTCTCCAATTGGGTGAATGAGTTTTCTAGGTTTACACCATCGCTCCGTGTTGTTATCTACCATGGTAACAAAAGTCAGAGAGATCAAATCAGAAGGAAACATATGCCTAGAACAGTTGGCCCAGAATTTCCCATAGTAATAACTTCGTATGAGATTGCGATGAATGATGCTAAGAAATGTTTTGCGCCATACAGTTGGAAATATCTTGTTGTGGACGAGGGACACAGGCTCAAAAACTCAAATTGCAAATTAGTGAAGTCATTGAGATACATTAATGTTGACAATAAACTTCTTTTGACTGGGACACCTCTCCAGAATAATTTGGCAGAGCTTTGGTCATTGCTGAACTTCATCTTACCTGATATATTCTCATCACTTGATGAATTTGAGAAATGGTTTAATCTGTCAGGAAAATGCACTAATGGAGCAACAATGGAAGAAATAGAAGAGAAAAGAAGAAATCAAGTGGTAGCCAAGCTTCATGGAATTCTTAGGCCATTTCTTTTGCGCAGGATGAAGTCTGATGTTGAGTTAATGTTGCCACGAAAAAAAGAGATAATTATTTATGCCAACATGACTGAGCATCAGAAGAGCTTGCAAGATCATTTGATTAACGAGAAACTGGGGGAATATTTGGAAGCGAAACTATCAGTTGGATGTGGTGCGACGAAGCTTAATAATTTGGTTATTCAACTTAGGAAAGTCTGTAACCATCCCGATCTCTTAGAATCAGCCTATGATGGTTCATATTTGTTTCCTCCGGTGAATGAGATAATCGAACAATGTGGAAAATTCCACTTGCTAGATAGATTGTTGCAGCGGCTATTTGCACGTAATCACAAGGTTCTGATCTTCAGTCAATGGACTAAAGTGCTAGATATAATGGATTACTATTTTAGTGAAAAGGGTTTTGAAGTTTGCAGGATTGATGGCTCGGTGAAATTGGATGATAGGAAACGTCAGATCGAGGACTTCAATGATACAAACAGCAATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATAAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATTGGTCAAACAAAGCCTGTTCACGTTTACAGGCTCGCAACTGCACAATCAGTAGAGGGTCGAATGTTGAAAAGAGCTTTCAGCAAGTTGAAACTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAGGAGCGTACAGCACCTTCCATTGTGGATGAAATGGAGGGTGAGGATGTTTTGGCATTGCTTCGAGATGAAGAAACAGCCGAGGACAAAATGATACAGAAAGATATCAGTGATGAAGACCTGGAGAAGCTTTTGGATCGCAGTGATCTTGTTATCAATAGCTCAACCGATGAGAAAGCTCCAGTTAGTACCTTTCCCCTTAAAGGGCCTGGATGGGAGGTGGTGATTTCTGCTGCGTCTGGCAGCATGCTTTCCACTCTTAACAGCTAA 2253 0.4083 MDDKNNVMNVDPPVESPTSVLEEEEVEVKSEEEVVADDGSSSLVSKLMAEEEKKLLEARAKEEEEPLEAPNLDDTQFNKLDELLTQTKLYSEFLLEKMDDITMNPSEQEKEDEEESQPSVKKKGRGAKRKAAKQCNTRKAKKAVEAMITRSKENLKTEDVNLTEEERTEKEQKDLMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKSRGLDGPYMIIAPLSTLSNWVNEFSRFTPSLRVVIYHGNKSQRDQIRRKHMPRTVGPEFPIVITSYEIAMNDAKKCFAPYSWKYLVVDEGHRLKNSNCKLVKSLRYINVDNKLLLTGTPLQNNLAELWSLLNFILPDIFSSLDEFEKWFNLSGKCTNGATMEEIEEKRRNQVVAKLHGILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKSLQDHLINEKLGEYLEAKLSVGCGATKLNNLVIQLRKVCNHPDLLESAYDGSYLFPPVNEIIEQCGKFHLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDDRKRQIEDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERTAPSIVDEMEGEDVLALLRDEETAEDKMIQKDISDEDLEKLLDRSDLVINSSTDEKAPVSTFPLKGPGWEVVISAASGSMLSTLNS* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0974 750 CDD SF2_C_SNF 495 630 - -
Tpr2g0974 750 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 364 IPR014001 -
Tpr2g0974 750 Gene3D - 420 721 IPR027417 -
Tpr2g0974 750 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 510 666 IPR001650 -
Tpr2g0974 750 PANTHER SNF2/RAD54 HELICASE FAMILY 12 749 - -
Tpr2g0974 750 MobiDBLite consensus disorder prediction 123 137 - -
Tpr2g0974 750 MobiDBLite consensus disorder prediction 105 140 - -
Tpr2g0974 750 MobiDBLite consensus disorder prediction 1 78 - -
Tpr2g0974 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 414 IPR027417 -
Tpr2g0974 750 PANTHER BNAC07G16550D PROTEIN 12 749 - -
Tpr2g0974 750 MobiDBLite consensus disorder prediction 47 66 - -
Tpr2g0974 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 706 IPR027417 -
Tpr2g0974 750 Gene3D - 185 415 IPR038718 -
Tpr2g0974 750 Pfam Helicase conserved C-terminal domain 510 620 IPR001650 -
Tpr2g0974 750 SMART ultradead3 180 372 IPR014001 -
Tpr2g0974 750 SMART helicmild6 536 620 IPR001650 -
Tpr2g0974 750 MobiDBLite consensus disorder prediction 18 32 - -
Tpr2g0974 750 Pfam SNF2-related domain 187 484 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0974 Tpr-Chr2 11663249 11669337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0974 170 641 RAD5 or RAD16-like Gene Family AT3G16600 24.394 9.12e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr2g0974 SNF2_N 5.7e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0974 K19001 - gmx:100817842 1147.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0974 2 11663249 11669337 Tpr2g0974 2 11663249 11669337 ECH