Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0953 ATGTACAACACAATGAACCATCAAGATCAAATGATGCTCATGTCTCAACTATTCCCTAGTGCTTACAATGAAGTAATTCCTCAACAAGGAGAGAAGAAGCCGAGACGAAGGCGTACTAAGAAGATCAAAGGAGATATTGCTAATGAAATGAATAAAAAGAGGAAATTAACTGATGAACAAGTTAATTTACTTGAACAAAACTTTACAAATGAACATAAACTTGAATCTGAAAGGAAAGATAAGCTTGCAATGGAGCTTGGTTTGGATCCAAGACAAGTAGCTGTTTGGTTCCAAAATAGAAGAGCTAGGTGGAAGAACAGAAAACTTGAAGAAGAATACAATAGTCTTAAGAAATTTCATGAATCTACTATGCTTGAGAAATGTCTCCTAGAAACTGAGGTATTGAAGTTAAGAGAACAACTTTGTGAGGCAGAGAAGGAAATTCATAGGCTTAGAGAGCCTATTGAAAATGTCACAAGCAATAGTTCAAGCACTTCATCAATGTCACAATCAATGGAAGTAGTGGATCCTCCATTTTTGGGTGAATTTGGAGTTGATTATGGATATGATGATGATGTGTTTTTGGTACCTAATGAGACACAATACTTCAATGGCATGGATTGGGTTACTTTGTATGTCTAA 642 0.3551 MYNTMNHQDQMMLMSQLFPSAYNEVIPQQGEKKPRRRRTKKIKGDIANEMNKKRKLTDEQVNLLEQNFTNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNRKLEEEYNSLKKFHESTMLEKCLLETEVLKLREQLCEAEKEIHRLREPIENVTSNSSSTSSMSQSMEVVDPPFLGEFGVDYGYDDDVFLVPNETQYFNGMDWVTLYV* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0953 213 SMART HOX_1 50 111 IPR001356 GO:0003677
Tpr2g0953 213 SUPERFAMILY Homeodomain-like 51 116 IPR009057 -
Tpr2g0953 213 Coils Coil 46 67 - -
Tpr2g0953 213 Pfam Homeodomain 52 106 IPR001356 GO:0003677
Tpr2g0953 213 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Tpr2g0953 213 ProSitePatterns 'Homeobox' domain signature. 82 105 IPR017970 GO:0000981|GO:0006355
Tpr2g0953 213 Gene3D - 45 115 - -
Tpr2g0953 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 212 - -
Tpr2g0953 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 212 IPR045224 GO:0003700
Tpr2g0953 213 CDD homeodomain 52 108 IPR001356 GO:0003677
Tpr2g0953 213 PRINTS Lambda-repressor HTH signature 78 87 IPR000047 GO:0003677
Tpr2g0953 213 PRINTS Lambda-repressor HTH signature 87 103 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0953 Tpr-Chr2 11517142 11519533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0953 1 213 Homeobox Transcription Factor Family AT4G36740 51.818 1.96e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tpr2g0953 Homeodomain 2.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0953 K09338 - gmx:100809616 286.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0953 2 11517142 11519533 Tpr2g0953 2 11517142 11519533 ECH