Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0937 ATGTCGAGTGGTTTTGGAGAATCGACACGAGCGTCTCAACCGAATCCATTGAATCCATCATGTTCTTCAGGGAACAGTTCCAACAATGATGCTGGTGATTTTGAATGTAACATATGTTTTGATTTGGCTCAGGATCCTGTGATTACACTTTGTGGTCATTTGTTTTGTTGGCCATGTCTTTATAAATGGTTACATTATCATTCTCAATGTCAAGAATGTCCTGTTTGTAAAGCACTTGTTCAAGAAGAGAAATTGGTTCCTCTTTATGGTAGAGGAAAATCACAAACTGATCCGAGGAATAAATCGTATCCTGGAATGGAGATTCCTCGTCGTCCTTCTGGACAGAGACCACAAACAGCGGATTCGGCTCCTCCTCCTCCTGATGCGAATTATCACACTGGACTGGCTGGAATTGGATTGATGGGTGGGTTTATTCCGATGGCAACTGCTAGATTTGGAAATGTTGCGCTTTCGACAGGTTTTGGTGGGTTTATCCCGTCTCTCCTCAATATTCACTTTCATGGTTTTCAGGATGCTACTGTTTATGGGACAACGTCTGGTTATCCCTTAGGGTTTAACGCATATCAGGGTGGGAATACTAGAGCTTTTATTTCGGAGCAAGTGCTGCGTAATGTTATGAAGAATTTGCTTCTGTTGATTGGATTTCTTGTCCTTCTTACGGTTATTTTTGTTATGTAA 699 0.4149 MSSGFGESTRASQPNPLNPSCSSGNSSNNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYKWLHYHSQCQECPVCKALVQEEKLVPLYGRGKSQTDPRNKSYPGMEIPRRPSGQRPQTADSAPPPPDANYHTGLAGIGLMGGFIPMATARFGNVALSTGFGGFIPSLLNIHFHGFQDATVYGTTSGYPLGFNAYQGGNTRAFISEQVLRNVMKNLLLLIGFLVLLTVIFVM* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0937 232 MobiDBLite consensus disorder prediction 1 24 - -
Tpr2g0937 232 Pfam Zinc finger, C3HC4 type (RING finger) 36 76 IPR018957 GO:0046872
Tpr2g0937 232 ProSiteProfiles Zinc finger RING-type profile. 36 77 IPR001841 -
Tpr2g0937 232 SUPERFAMILY RING/U-box 32 89 - -
Tpr2g0937 232 CDD RING-HC_AtRMA_like 34 78 - -
Tpr2g0937 232 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Tpr2g0937 232 SMART ring_2 36 76 IPR001841 -
Tpr2g0937 232 MobiDBLite consensus disorder prediction 90 125 - -
Tpr2g0937 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 99 IPR013083 -
Tpr2g0937 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tpr2g0937 232 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0937 Tpr-Chr2 11331129 11332499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0937 25 230 C3H Transcription Factor Family AT2G23780 57.209 7.39e-81 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0937 K10666 - gmx:100814783 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0937 2 11331129 11332499 Tpr2g0937 2 11331129 11332499 ECH