Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0932 ATGGTATCTCAAGGTACCAATTTCATCATATGGCGTTTTGTTTTGGCCATTGTGATTGTAATATTTTTCACACCGAAACTTAGTTCTGCCAAACAATCCAAGTTAATGGGCATGAAAATGAATACAATTGATAGTTGCTGGAGGATAATTGATAGTTGCTGGAGGCCAAATCCTGAATGGAGGAGGCATAGACAACAACTAGCGACTTGCTCTGTAGGCTATGTTGGAAAGATGACAAACAACATTGGTAACGACCTCATACATTATAAAGTTACTGACCCAAATGACGATCCCACAAATCCCAAACCTGGTACGTTGAGATATGGAGCTTCTGTAATTCAAAGTAAAGTGTGGATCACATTCGAAAAAGACATGAATATTCAACTCATGAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGCGTCAATGTCCACATTGCTAATAATGCATGCTTGATGATATCCAAGGCCACGGACATAATAATTCATAGCATTAGAATCCATCACTGCAAAGCTCAAGCACCGGGGATGGTCATGGGACCTAATGGAAAGGTAATTCATATTGGTCCAGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATAGATCATAATACAATTTATGAATGTGAAGATGGTCTTCTTGATGTCACGAGAGGTTCTACTAATGTCACTATATCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGCCACGATGATGGATATGTGAGAGACAAAAACATGAAAGTTACCGTTGTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCTAGGATTCGCTATGGATATGCACATGTAGCCAACAATCTTTACTTTGGGTGGATGCAATATGCCATCGGTGGAAGTATGAGGCCTAGTCTCAAAAGTGAGGCTAACCTCTTCATAGCACCAAAAGTTGGGAGTAAAGAGGTTACATGGAGAAAAATTGGTAACACAAGTGGGGATAAATGGAAATTTCATTCTGTAAGGGATGCATTTGAAAATGGAGCCTATTTTACGGTAACAAAAGGAGGACGTGTGCCAAAGCCGAATTATAGAAAAGAGCAGGGTTTTAAAGTTGTTGATGTCAAATTTGTTAGATCATTAACAAGATCAGCAGGTGCACTTCAATGCAGTAGAACATCTATATATGTTAAAAAAAAACATAGAAAATAA 1218 0.3859 MVSQGTNFIIWRFVLAIVIVIFFTPKLSSAKQSKLMGMKMNTIDSCWRIIDSCWRPNPEWRRHRQQLATCSVGYVGKMTNNIGNDLIHYKVTDPNDDPTNPKPGTLRYGASVIQSKVWITFEKDMNIQLMKPLLISSFTTIDGRGVNVHIANNACLMISKATDIIIHSIRIHHCKAQAPGMVMGPNGKVIHIGPVDGDAIRLVTASKIWIDHNTIYECEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYFGWMQYAIGGSMRPSLKSEANLFIAPKVGSKEVTWRKIGNTSGDKWKFHSVRDAFENGAYFTVTKGGRVPKPNYRKEQGFKVVDVKFVRSLTRSAGALQCSRTSIYVKKKHRK* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0932 405 Pfam Pectate lyase 134 315 IPR002022 -
Tpr2g0932 405 Gene3D - 48 391 IPR012334 -
Tpr2g0932 405 SMART amb_all 124 321 IPR002022 -
Tpr2g0932 405 PANTHER PECTATE LYASE 18-RELATED 2 395 IPR045032 GO:0030570
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Tpr2g0932 405 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Tpr2g0932 405 PANTHER PECTATE LYASE 2 395 - -
Tpr2g0932 405 SUPERFAMILY Pectin lyase-like 48 392 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0932 Tpr-Chr2 11278819 11280543 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0932 78 325 Polysaccharide Lyase AT5G09280 71.371 1.88e-139 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0932 K01728 - gmx:100780437 655.981