Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0877 ATGGAACAACAAAAACAACAACTCAACTTAGATTTGACTTTAGCTTTAGCCTCTGTTCCCAAAACTGTTTCTCATTTCCTCAACGACGTCGTTTCTCAGACCAATAATTCATCTGAAAAACTTTCAAACCTTGATGACTTAGTTCACAGATTGGAAGAAGAAATGAACAAAGTTCTTGCTTTCAAACGTGAACTCCCTCTTTGCATAATCCTCCTTAACAATGCTATAGAAACATTGAAGGAGGAAAAAGAAAAAGTTAGGTTAATGAAAATGGAAGATCCAAAAAACTCCAGTGATAATAAGAAGAATTGGATGAATTCAGTTCACCTTTGGACTAATGAAAATAATTCGAATGAAGATGTTGAAAGGTGTGTGTCAAAGAAGAGTAATGGCGGAGGGGTATTTATGGAATTTAATGGAAATTCTTTGAAGGAGGTTTCTCAAGTTCCTAGCTATAGTTTGGTGTCTGAAGTGAGTCATGGAAATTCCAAGAGTGGTGGTAGTTCTGGATCGTCTTTGTTGCGTGTTGAGACACAGAATCAGCCGCAGCCACCACATCCTTTGCAGCAGAATTCGAGGAAACAAAGGCGTAGCTGGTCGTCTGAGCTTCATCGCCGTTTTGTTGATGCACTTCAACAGCTTGGTGGAGCACATGCCACTCCTAAACAAATTAGGGAAAAGATGCAAGTGGACGGATTAACAAACGATGAAGTGAAAAGTCATTTGCAAAAATACAGGCTTCATGTTAGAAGATTTCCAGTTTCTTCAATTGAAGAAGCTAATAAACTCGCCTTATATATGACTCAAGATCACCGTGAAGATACATCAAAGGGAAACATATCAGAGTCTCTTTCACCACAGGGTCCTCTTACTCCTCTTCTTCTTGGAGGATCTGTTAAAGGTCTCTCAAGCCATGGAAGAAACAGTATGGATGCAGATGACGAGCAATCAGATTGCAGGAATTGGAAAGGTGATCATGAGCAGCTACATGAAGCAGAATAA 1002 0.3942 MEQQKQQLNLDLTLALASVPKTVSHFLNDVVSQTNNSSEKLSNLDDLVHRLEEEMNKVLAFKRELPLCIILLNNAIETLKEEKEKVRLMKMEDPKNSSDNKKNWMNSVHLWTNENNSNEDVERCVSKKSNGGGVFMEFNGNSLKEVSQVPSYSLVSEVSHGNSKSGGSSGSSLLRVETQNQPQPPHPLQQNSRKQRRSWSSELHRRFVDALQQLGGAHATPKQIREKMQVDGLTNDEVKSHLQKYRLHVRRFPVSSIEEANKLALYMTQDHREDTSKGNISESLSPQGPLTPLLLGGSVKGLSSHGRNSMDADDEQSDCRNWKGDHEQLHEAE* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0877 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 328 IPR044787 GO:0003700|GO:0006355
Tpr2g0877 333 MobiDBLite consensus disorder prediction 157 196 - -
Tpr2g0877 333 Coils Coil 69 92 - -
Tpr2g0877 333 MobiDBLite consensus disorder prediction 157 201 - -
Tpr2g0877 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 250 IPR017930 -
Tpr2g0877 333 MobiDBLite consensus disorder prediction 307 333 - -
Tpr2g0877 333 Pfam Myb-like DNA-binding domain 196 246 IPR001005 -
Tpr2g0877 333 SUPERFAMILY Homeodomain-like 192 251 IPR009057 -
Tpr2g0877 333 Gene3D - 191 252 - -
Tpr2g0877 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 194 248 IPR006447 GO:0003677
Tpr2g0877 333 Coils Coil 34 64 - -
Tpr2g0877 333 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 4 328 - -
Tpr2g0877 333 MobiDBLite consensus disorder prediction 271 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0877 Tpr-Chr2 10763966 10766293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0877 6 243 G2-like Transcription Factor Family AT4G37180 42.593 9.65e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr2g0877 Myb_DNA-binding 2.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0877 - - gmx:100785723 312.383