Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0875 ATGTCATCATCATCAAATTCTCCGTGTGCGGCGTGCAAGTTTCTCCGGCGAAAATGCACACAAGAGTGTGTGTTTGCACCGTATTTTCCACCGGACAATCCTCAAAGATTTGCATACGTACACAAAGTTTTCGGTGCGAGTAACGTGGCAAAGCTGTTAAACGAACTTAATGCGACTCAGCGTGATGACGCTGTAAAATCGTTGGCTTATGAGGCCGAGGCGCGGCTTAGAGACCCGGTTTATGGCTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCAATTCAAGGTGAACTTAACAATGCTAAAAAGGAACTTGCTACTTATATTGGTCCTCAAGCGCTTCAAAGTATTCCAACAACCATGCTTCAGCAACAGCAGCAGCATAATAACCCTTTTGGTGGTAATTCGCTTTACCCTTATAATGGTAACGTTCCGGCCGTGACCGCGGCTAATCAGATGGTGATTCGTGATCCGCAACCGCCACTGCAGCAGCAGATCTTGGACCCTCATCAATTGGCTGTTGCTGTTGCTGCTAGAGAGCAACAGGACATTTTTAGGACTTTTGAAAATCAACAGCAACAGCAGGAATTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCTGTTTCTAATTCTGCTGGTGGGTTCACACCAGTTTCTGCTGGTACTGGTGTTGGTGGTGGTGTTGTTGCTTCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAATACTTATCACCACATGCAACAATCACAACAAGGACAAGGACAAGGAGAATCTCATCCTCATCATCAGCAGCATCATAATCATCATCTTCCACTTCAGGCTCAGTTATTGCTTCCTCCTCAGCAGAAACAAGCACAGCCACAAACTCAACATTCACCATTGATCCATCATCACCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTCTTGTTGA 975 0.4513 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQSIPTTMLQQQQQHNNPFGGNSLYPYNGNVPAVTAANQMVIRDPQPPLQQQILDPHQLAVAVAAREQQDIFRTFENQQQQQEFLRFSGGFDVDSVSNSAGGFTPVSAGTGVGGGVVASDQLSPSLALGSFDNTYHHMQQSQQGQGQGESHPHHQQHHNHHLPLQAQLLLPPQQKQAQPQTQHSPLIHHHQQQTESEECRSVGLGPSC* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0875 324 Coils Coil 87 107 - -
Tpr2g0875 324 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 3 288 - -
Tpr2g0875 324 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Tpr2g0875 324 MobiDBLite consensus disorder prediction 285 305 - -
Tpr2g0875 324 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 288 - -
Tpr2g0875 324 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Tpr2g0875 324 MobiDBLite consensus disorder prediction 254 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0875 Tpr-Chr2 10746092 10750174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0875 3 252 AS2 family AT5G66870 52.060 1.82e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr2g0875 LOB 5.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0875 - - mtr:MTR_5g017950 442.58