Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0858 ATGGCGGCCACCACTCCCTCCTCCTCTTCACCACCAAAACCCACCCTCACCCTTTCCTCACTCACAAAAAAACCCCAACCCATCCCATGGACTCATCAAGAAACTATTAACCTCATCAGAGCTTATCAAGAAAAATGGTACTCTCTCAAACGTGGTCCACTTCGCGGCAGTCAATGGGAAGAAGTTGCCGTTGTAGTCGCTGCTCGTTGTGGTTACGATTACAATCATCCTTCTAAAACCGCTCTTCAATGTCGTCATAAGATGGAAAAACTCCGTCAACGTCACCGATCTGAAAAACACCGTCTCACCGCTACTTCCTCCGCTGTTTCTTCTCGTTCTTGGCAGTATTTTCGTCTCATGGATGATCTTGAACGTGGTCCTCTTCCTATCTCTGCTCGACCTGTTCTTCACAATTTCCCTGTATCTGATGAGGATAGTGATGGTGGTGAGAGAGGGAAAAAGCCTAGTGTTAGGTCAAGAAGTTTGAAGCATAGTGTTAGGTCAAGAAGTATGAATAATATTCTTAACCAGAAACCAGCTTTTACAAATGAAATTGATGATGGTGGTGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGATGATGAAGAGGAGGATGAGGGAGTGACGATGATGAAGGGGTTGACGGCGGAGTTAAGAGGTTTTGCTGAGAGGATTGTTGGATTGGAAAATATGAAGATGGAGATGATGAAAGAAACTGAAAGGTTTAGGTTGGAGATGGAGAATAAGAGGATTCGTATGATACTTGAATCTCAATGGAGGATTGTTGATTCTATTGGAAAAGCATTTGGGTCTTCTTAG 834 0.4436 MAATTPSSSSPPKPTLTLSSLTKKPQPIPWTHQETINLIRAYQEKWYSLKRGPLRGSQWEEVAVVVAARCGYDYNHPSKTALQCRHKMEKLRQRHRSEKHRLTATSSAVSSRSWQYFRLMDDLERGPLPISARPVLHNFPVSDEDSDGGERGKKPSVRSRSLKHSVRSRSMNNILNQKPAFTNEIDDGGDDDDDEEEEEEEEEDDDEEEDEGVTMMKGLTAELRGFAERIVGLENMKMEMMKETERFRLEMENKRIRMILESQWRIVDSIGKAFGSS* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0858 277 MobiDBLite consensus disorder prediction 139 212 - -
Tpr2g0858 277 MobiDBLite consensus disorder prediction 1 24 - -
Tpr2g0858 277 Gene3D - 30 97 - -
Tpr2g0858 277 SMART 118neu2 37 128 IPR006578 -
Tpr2g0858 277 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 5 276 - -
Tpr2g0858 277 ProSiteProfiles Myb-like domain profile. 29 92 IPR001005 -
Tpr2g0858 277 MobiDBLite consensus disorder prediction 186 212 - -
Tpr2g0858 277 Pfam Myb/SANT-like DNA-binding domain 29 123 IPR044822 -
Tpr2g0858 277 MobiDBLite consensus disorder prediction 166 180 - -
Tpr2g0858 277 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 5 276 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0858 Tpr-Chr2 10504528 10505836 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0858 30 142 Trihelix Transcription Factor Family AT3G14180 29.752 1.64e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr2g0858 Myb_DNA-bind_4 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0858 - - mtr:MTR_5g017500 353.599