Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0856 ATGTCGCAACGGTCGGTGCCAGCGCCGTTTTTGACAAAGACGTATAATATGGTGGATGATTTTGCGACGGATGATGTGATATCTTGGAGTGAAAATGGTGCAAGTTTTGTTGTGTGGAAACATGCGGATTTTGCAAGGGATTTGCTACCAAAATATTTTAAGCACAATAATTTCTCTAGCTTTGTTCGCCAGCTCAACACTTATGGATTCCGAAAAGTTGTGCCAGACAAATGGGAATTCGCAAACGAAAATTTCAAGCAAGGCCAAAAACACCTCCTCATCGATATCAAACGCCGCAAAACCATACCCCAACCGTTATCACAACCTCTAGAAACCGAAAAAACCAACGCCGACAACTCCTCTCCATCAAACTCCGCCAACGACGGAGCAGGATCCACCTCCAGCTCAACCTCTTCCCCTGATTCAAAAAACCCGGGATCAATCGAAACAACACTTCCCCATAGCGTCAATTTATCGAGCGAGAACGAGAAATTGAAAAAGGATAACGAAATATTGAGTAACGAATTGGCTCGTGCGAAGAAACAGTGCGATGAGTTGGTGACATTTCTAAAAAACGGTTTAAATGTAGGACCGGATCAAATAGATCGCATTATGAAGCCACAAGGAAACTATGAATCTGTTCAAAATGCGGTTGGTGAAGGTGAAGAAAATGGAAGAGATTGTTTGAAATTGTTTGGTGTTTGGTTGAAAGGAGAAGATTATTCAAAGAAAAGAAAGAATAACATGAGAGATTGTGAAGACCAATTGGGCTTTGGTGGGGCTAAGGCTAAAGTGATGAACAACAATGTTGTTGACTTTAGTGCTGTCAATGTTGTGAACATGATGAAAAGTGGCAAGGTTTGTAACTAA 870 0.4149 MSQRSVPAPFLTKTYNMVDDFATDDVISWSENGASFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDKWEFANENFKQGQKHLLIDIKRRKTIPQPLSQPLETEKTNADNSSPSNSANDGAGSTSSSTSSPDSKNPGSIETTLPHSVNLSSENEKLKKDNEILSNELARAKKQCDELVTFLKNGLNVGPDQIDRIMKPQGNYESVQNAVGEGEENGRDCLKLFGVWLKGEDYSKKRKNNMRDCEDQLGFGGAKAKVMNNNVVDFSAVNVVNMMKSGKVCN* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0856 289 Coils Coil 155 182 - -
Tpr2g0856 289 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g0856 289 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 289 - -
Tpr2g0856 289 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 289 IPR027725 -
Tpr2g0856 289 MobiDBLite consensus disorder prediction 103 162 - -
Tpr2g0856 289 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g0856 289 MobiDBLite consensus disorder prediction 105 159 - -
Tpr2g0856 289 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g0856 289 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Tpr2g0856 289 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g0856 289 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g0856 289 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr2g0856 289 Gene3D - 2 101 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0856 Tpr-Chr2 10488622 10491255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0856 2 289 HSF AT4G36990 50.671 5.96e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr2g0856 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0856 K09419 - gmx:100791543 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0856 2 10488622 10491255 Tpr2g0856 2 10488622 10491255 ECH
Tpr2g0856 2 10488622 10491255 Tpr4g4046 4 47163352 47168473 PCT