Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0848 ATGGAACAGAGAAAGCTTGTGGTTTTGGGGATCCCATGGGATGTTGATACCGAGGGCTTGAAAGAATACATGAGCAAATATGGTGAACTAGAAGATTGCATTGTCATGAAGGAGCGTTCAACTGGACGATCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCCAAGGAAGTATTGTCAGGTGAACATACTCTTGGAAATAGGACGCTGGAGGTCAAGGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGCCAAAAAAGCTACCAGAATTTTTGTGGCCAGGATTCCACAAGAAGTAACAGAAGAAACTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATTTGTACATGCCAAAGGATCAAGGCTCAAAGATGCATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGAATCTGTGGAGAATTTGATGTCAGAAACCCATGAACTCGGAGGTTCTGCTGTAGTGGTTGATCGAGCTACACCTAAGGATGATGACATTAAGCCAACTGCCAGAGTGTCAGGCAGAATGTCACAGGGAGGATATGGTGCATACAATGCATATATTTCTACAGCAACTAGATATGCAGCACTCGGAGCTCCTACTTTGTATGACCGTCCTGGCCCAATTTATGGAAGGGGAGAGCCTCGTCGGAGAATTAGCAAAAAGATTTTTGTTGGTCGTCTCCCTCCAGAAGCAAATTCTGAGGATCTCCATCAGTATTTTGGAAGATTTGGCCGTATAGAAGATGTTTACATTCCCAGAGATCCTAAGAGAACAGGTCACAGGGGTTTTGGATTTGTTACTTTTGCTGAAGAAGGTGTAGCAGATCGTGTCTCTCGAAGGTCTCATGAGATTTGTGGACACCAGGTGGCAATAGATTCAGCCACACCTGTTGACGATACTGAGCCCAGTGAGAATTTTATGATGAACAGTATGGAATCTTTTGGGGGATATGGTGGTCCAGTGCGAAGTTATGGGAGGATGTATGGTGGTTTAGACTACGATGATTGGGGTTATGGAGTTCCCGGTGCGAGGCCATTAAGAACAGATTATCAAGAGCAGATTGGGAGGCCGTCAAGAGTAGATTACCAAGAGCAGATTGGGAGGCCATCAAGAGTAGATTACCAAGAGCAGATCGGGAGGCCATCAAGAGTAGATTATCAAGAGCAGATTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGGCCATACTAG 1236 0.4466 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHTLGNRTLEVKVATPKEEMRAPAKKATRIFVARIPQEVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFANAESVENLMSETHELGGSAVVVDRATPKDDDIKPTARVSGRMSQGGYGAYNAYISTATRYAALGAPTLYDRPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLHQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFAEEGVADRVSRRSHEICGHQVAIDSATPVDDTEPSENFMMNSMESFGGYGGPVRSYGRMYGGLDYDDWGYGVPGARPLRTDYQEQIGRPSRVDYQEQIGRPSRVDYQEQIGRPSRVDYQEQIGRPSRADWRYRPY* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0848 411 SUPERFAMILY RNA-binding domain, RBD 227 327 IPR035979 GO:0003676
Tpr2g0848 411 PANTHER OS01G0945800 PROTEIN 3 411 - -
Tpr2g0848 411 Gene3D - 224 309 IPR012677 -
Tpr2g0848 411 SMART rrm1_1 229 300 IPR000504 GO:0003723
Tpr2g0848 411 SMART rrm1_1 93 164 IPR000504 GO:0003723
Tpr2g0848 411 SMART rrm1_1 5 76 IPR000504 GO:0003723
Tpr2g0848 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Tpr2g0848 411 SUPERFAMILY RNA-binding domain, RBD 90 190 IPR035979 GO:0003676
Tpr2g0848 411 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 411 - -
Tpr2g0848 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 304 IPR000504 GO:0003723
Tpr2g0848 411 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Tpr2g0848 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Tpr2g0848 411 Gene3D - 86 197 IPR012677 -
Tpr2g0848 411 Gene3D - 1 85 IPR012677 -
Tpr2g0848 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Tpr2g0848 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 285 IPR000504 GO:0003723
Tpr2g0848 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0848 Tpr-Chr2 10370617 10378101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0848 6 278 Eukaryotic Initiation Factors Gene Family AT3G16380 23.843 1.09e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0848 K14411 - gmx:100795240 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0848 2 10370617 10378101 Tpr2g0848 2 10370617 10378101 ECH