Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0833 ATGGCGGATGAAGATGGCTCATCAAGCAGGAAGCGAAGACCAACCAGAGGACCCGATTCCACCGCCCGCAGCCAAGCATTAGAGCGTCTCAAAGCACGTCGATCCGGCGATCGTGGATCCGACACCGCCGGACCTCAAATCAGGTTAGAAAACCCTATCTACGACACAATCCCGGAAGAAGAATACAACGCCCTAGTCGCTAGCCGCCGCGATCAAGCGCGGTCATTCATCGTCGACGATGAAGGCATCGGTTACGGCGACGAAGGCGAAGAAGAGGATTGGTCCAAAGCCGGTTTCTCCCTTTCTGACGATGAATCTGAAGGTGAGTCGGAGAAACCTAAACGGAAGAAAGATAATTCTCAAACTAATACTAAACGTCCTTCTTCTTCTGCTGCTAAGCTCTCAGCCGCTGCTGCTATGATGGGAGGGCAGAGAGTGTCTTCCATGTTTACTTCCGCTGTTTTCAAGAAAAGTAGAGACGATAAGGCTTGCGAGAGCCTCGTTGACGAGGTTCTCAAGGAGTTTGCGCCGGATGAGACTGATAAACTCAGCCGTAGAAAAGTGCAATCCAATTCGTCTTCAGTTTCCAACGATGCTGTGCAGATTAAGCACTCTGCTGAATCTGTAAGAGGTTCTTTGCACCAGAATTTTGTAATTTCAAATGTTGATACTGAATCGGTTAAGGTTAATAAGGATAATGGATCTAGGTTAGGGTTAGAGCAAAAGTGTGAAGTAGAAGTGAATGAAAGTTTGGGAAATGATGAGGGACAAATGGTAGTGGAATCTAATGATTGGTCTTCTCCGAGTAATGGGGATTTAGTTGAAGAGAAAGTCGCGAAGGCGAAAGAGGATGAAATGGGAGCAAAACCTGTTATTAAAAAGGAGGGTTTCACTTTGAATGCGAAAGTTAATCAAGAGGTGGTGGATCCGAAGTCGTATGCTACTGCTGGTTGGAAGGCAGCGAGGAGTGGTGCTGGTGGATGCGGGGAAACAAATGTTGCTGATTCGAATTCGAATAATCAACAAAACTCTGAGTTCAATTTGGAGCCAGAGGGATCACTTCCTTTCTACATAATTGATGCTTATGAGGAGTATTATGGAGCCAATATGGGTACTCTTTATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCATCCTTTGCATTCCATCGATGAGATGATAAAGCTTGAGAAAGATGTCCAAGAGTCTCGAGTTTCTCCCACGGATTTCCGTAAAAAGCTGCAAGATGCAGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGGGTGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGATCTGACATTCCTGCAGGTGAAAATTATGTGGTGAAAATAAATTATCCGTTCAAGGATACAGCGCTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTTCTTGGAGCTCGAAGCAGTGCACTTGAGCTATTTCTGATTAAAAGAAAAATTAAGGGGCCTTCATGGCTACAAGTTTCAAACTTTTCTACCTGCTCAGCTTCCCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGATTCTCCTAAAGACATCAGGGTTTCTTCTTCATCTTCCTCAAAAATCACTCTCGTGATTCCTCCTGTGGTTGTCACAGCAATAAACTTGAAGACCACCATAAATGAAAAACAGAACATAAATGAAATTGTGTCTGCATCTGTTGTCAGTTGCAATATGGTTAAGATTGACACTCCTATGCTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGCAAACTTGATGGGAATATATTTCCAATGGGATTCAATACAGAGGTCACAGACAGAAACGTAAAAGCTGGGTCAAATGTTCTTTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTCTAATGTTACAATTACACAAGATGGATAGCGATGTTCTTGTTGGACATAATATTTCTGGATTTGATCTGGATGTTCTTCTCCACAGATCTCAGGCTTGCAGAGTACCAAGCAGCATGTGGTCTAAACTGGGCCGTCTCAACCGTTCTACGATGCCTAAGCTCGATAGAAGGGGCAAAACATTTGGTTTTGGAGCTGATCCTGCTATAATGTCTTGTGTTGCCGGTCGGCTTCTTTGTGATACGTATTTGTGTTCCCGAGACCTATTAAAGGAGGTTAGTTATTCTTTAACCCACCTTGCAAAAACACAGCTGAACCAGTCTCGGAAGGAAGTTGCCCCACATGACGTTCCAAAAATGTTTCAAACTGCAAAATCCCTGATGGAGCTAATTGAATATGGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTTATTTGAGTGTCCTTCCTCTCACACGCCAGTTGACTAATATAAGTGGCAATCTATGGGGAAAAACTCTTCAGGGTGCCCGGGCACAGAGGGTGGAGTATCTTTTGTTGCACGAGTTCCATAAAAAGAAATATATTGTTCCAGACAAGTTTTCTAATAACACAAAAGAAACAAAGTTGACAAAACGCAGAGTAACTCATGGCGTCGACGGTAGCAACTTTGATGATGCAGATATTAACGATGCAAACTATCATAATGATGCTTCTGAAAGTGATCATAAGAAAAGCAAAAAGGCTGCTTCCTATGCTGGAGGGCTGGTTTTAGAGCCAAAGAAGGGTCTATACGACAAATATATATTACTTCTGGACTTCAACAGTCTGTACCCTTCTATCATTCAGGAATATAATATCTGCTTCACAACCGTTGAAAGATCTGCAGATGAATCTTTTCCTCGTCTGCCATCCAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTCAAAAAGCTTGTTAAGTGGAGGCGAGATGTGAAGACATGGATGAAGACTGCATCTGGTCTTAAACGCCAGCAACTGGACATTCAGCAGCAAGCACTAAAGCTTACTGCAAACAGTATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCAAAGCCACTGGCTGAGCTCATAACCCTACAAGGAAGGGAGATTCTACAAAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTGATCTATGGTGATACTGATTCAATAATGGTTTACAGTGGGCTAGATGATATTGCAAAAGCAACTTCAATATCTAAGAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTAGAAATTGATCTTGATGGTTTGTATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTTAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGCAAAGGTCTTGATATTGTCCGCCGTGACTGGAGCTTATTAGCGAAAGATTTAGGAGATTTTTGCTTGACTCAAATTTTGTCGGGAGGGTCATGCGAAGATGTCGTCGAATCAATTCACAACTCTCTCATAAAGGTACAAGAAGAAATGAGGAACGGACAAGTAGCACTAGAAAAATATGTCATCACAAAGACATTGACAAAACCACCCGAAGCATATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCCTCTGGTTGCTCTGTTGGTGATACGATCCCTTATATAATTTGCTGTGAACAGGGTGGTAGTTCAGGCAGTGCAACGGGAATTGCTCTACGTGCCAGACATCCTGATGAACTAAAACAAGAACAGGGGACATGGCTAATTGATATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCTATTCAGGGTACAAGCCCTGAAAGACTTGCTGATTGTTTAGGGCTTGACACATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAGGCGACGATCCTACAAGCTCACTCTTGTTTGCTGGTGATGATGAGGAGAGGTATCGGGGATGTGAGTCGCTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCTGTGTTCAAATCTATTTGTATGTTGGGAAATGAAAAGCCAACCAGCTTAGGCGTGGAGGAATCTGACTACAATTTCTGGCGTAAGCTGTGCTGTCCCAAATGCTTTGAAAATGGTGTTGGTAGAATTTCTCCTTCAATGATAGCCAATCAGGTCAAACGGCAAGCAGAGAAGTATGTTTTAATGTATTATAGAGGTTTACTAATGTGTGATGATGAAACATGCAAGCATACAACACGAAGTGTCAGCTTTCGTTTGGTTGGTGATTCTGAGCGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGGCATCTTAATAGAAAGTACACTGAAGCCGACTTGTACAAGCAGCTATCATATTTTTGTCATGTGTTTGATACTGTTTGTTGTATAGAAAAGATGGAGGCAAAGTCTAGGATACCAATAGAGAAGGAGTTGATCAAAATTAGGCCAATAGTTGATCTTGCTGCATCAACAATACAAAAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAGCTGCAGGATCTGGTTGTTACAATTTAA 4626 0.4233 MADEDGSSSRKRRPTRGPDSTARSQALERLKARRSGDRGSDTAGPQIRLENPIYDTIPEEEYNALVASRRDQARSFIVDDEGIGYGDEGEEEDWSKAGFSLSDDESEGESEKPKRKKDNSQTNTKRPSSSAAKLSAAAAMMGGQRVSSMFTSAVFKKSRDDKACESLVDEVLKEFAPDETDKLSRRKVQSNSSSVSNDAVQIKHSAESVRGSLHQNFVISNVDTESVKVNKDNGSRLGLEQKCEVEVNESLGNDEGQMVVESNDWSSPSNGDLVEEKVAKAKEDEMGAKPVIKKEGFTLNAKVNQEVVDPKSYATAGWKAARSGAGGCGETNVADSNSNNQQNSEFNLEPEGSLPFYIIDAYEEYYGANMGTLYLFGKVKTGNLYQSCCVVVKNMQRCVYAIPSHPLHSIDEMIKLEKDVQESRVSPTDFRKKLQDAVSDIKNEIAKHLVDLGVSTFSMAPVKRKYAFERSDIPAGENYVVKINYPFKDTALPVDLKGESFCALLGARSSALELFLIKRKIKGPSWLQVSNFSTCSASQRVSWCKFEVTVDSPKDIRVSSSSSSKITLVIPPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPMGFNTEVTDRNVKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYLCSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHDVPKMFQTAKSLMELIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNNTKETKLTKRRVTHGVDGSNFDDADINDANYHNDASESDHKKSKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSADESFPRLPSSKTTGVLPELLKKLVKWRRDVKTWMKTASGLKRQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMVYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLIKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICCEQGGSSGSATGIALRARHPDELKQEQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDTSKFQHKSSEALGDDPTSSLLFAGDDEERYRGCESLVLSCPSCSGTFDCPPVFKSICMLGNEKPTSLGVEESDYNFWRKLCCPKCFENGVGRISPSMIANQVKRQAEKYVLMYYRGLLMCDDETCKHTTRSVSFRLVGDSERGTVCPNYPRCNGHLNRKYTEADLYKQLSYFCHVFDTVCCIEKMEAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVTI* 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0833 1541 TIGRFAM pol2: DNA polymerase (pol2) 53 1291 - -
Tpr2g0833 1541 Gene3D - 396 522 - -
Tpr2g0833 1541 MobiDBLite consensus disorder prediction 1 57 - -
Tpr2g0833 1541 MobiDBLite consensus disorder prediction 1 18 - -
Tpr2g0833 1541 Pfam DNA polymerase family B, exonuclease domain 386 764 IPR006133 -
Tpr2g0833 1541 Gene3D - 1137 1321 IPR042087 -
Tpr2g0833 1541 SUPERFAMILY DNA/RNA polymerases 855 1308 IPR043502 -
Tpr2g0833 1541 Pfam DNA polymerase alpha subunit p180 N terminal 27 94 IPR024647 -
Tpr2g0833 1541 Pfam DNA Polymerase alpha zinc finger 1334 1537 IPR015088 GO:0003887|GO:0006260
Tpr2g0833 1541 MobiDBLite consensus disorder prediction 179 201 - -
Tpr2g0833 1541 SMART polmehr3 571 1073 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr2g0833 1541 MobiDBLite consensus disorder prediction 80 137 - -
Tpr2g0833 1541 Pfam DNA polymerase family B 830 1293 IPR006134 GO:0000166|GO:0003677
Tpr2g0833 1541 Coils Coil 1087 1107 - -
Tpr2g0833 1541 CDD POLBc_alpha 905 1309 IPR045846 GO:0003887|GO:1902975
Tpr2g0833 1541 PRINTS DNA-directed DNA-polymerase family B signature 930 943 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr2g0833 1541 PRINTS DNA-directed DNA-polymerase family B signature 1006 1018 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr2g0833 1541 PRINTS DNA-directed DNA-polymerase family B signature 1059 1067 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr2g0833 1541 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1540 - -
Tpr2g0833 1541 Gene3D - 571 882 IPR036397 GO:0003676
Tpr2g0833 1541 SUPERFAMILY Ribonuclease H-like 351 859 IPR012337 -
Tpr2g0833 1541 MobiDBLite consensus disorder prediction 187 201 - -
Tpr2g0833 1541 Gene3D - 356 555 - -
Tpr2g0833 1541 Gene3D Helix hairpin bin 969 1020 - -
Tpr2g0833 1541 Gene3D Palm domain of DNA polymerase 899 1124 IPR023211 -
Tpr2g0833 1541 CDD DNA_polB_alpha_exo 571 822 - -
Tpr2g0833 1541 Gene3D DNA Polymerase alpha, zinc finger 1333 1526 IPR038256 -
Tpr2g0833 1541 MobiDBLite consensus disorder prediction 89 122 - -
Tpr2g0833 1541 ProSitePatterns DNA polymerase family B signature. 1061 1069 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0833 Tpr-Chr2 10243808 10255598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0833 5 1539 Core DNA Replication Machinery Family AT5G67100 60.296 0.0 1837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0833 K02320 - gmx:100798779 2268.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0833 2 10243808 10255598 Tpr2g0833 2 10243808 10255598 ECH