Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0803 ATGCCGCCGTCATCAGAATCACGTTATTCTTCCTCTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTACCATGGTGGTTTCAATCTTGGTCTGAATTGTGTAGAGGCAGTCAATTTTGCTCTAGCTGACTGGCTACCACACGGTTCATTTGGAGTTGATCTCTATAAGCAGTTTCACAAAACAGTTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGAGTATTATAGTATGGGGAAATATTGGTGGTGCTGGATATAGGTTAAGGAAAAACAGAAAAGGAAAAACAGCCTGGATATTGGTGGTGCTGAATTAA 330 0.4152 MPPSSESRYSSSQEPGNFVITFPRSYHGGFNLGLNCVEAVNFALADWLPHGSFGVDLYKQFHKTVVLSHEELLCVVAQSIIVWGNIGGAGYRLRKNRKGKTAWILVVLN* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0803 109 ProSiteProfiles JmjC domain profile. 1 59 IPR003347 -
Tpr2g0803 109 PANTHER LYSINE-SPECIFIC DEMETHYLASE 11 85 - -
Tpr2g0803 109 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 11 85 - -
Tpr2g0803 109 Gene3D Cupin 7 84 - -
Tpr2g0803 109 SUPERFAMILY Clavaminate synthase-like 12 78 - -
Tpr2g0803 109 Pfam JmjC domain, hydroxylase 9 42 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0803 Tpr-Chr2 9783587 9790851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0803 13 81 JUMONJI Transcription Factor Family AT1G08620 50.725 7.95e-21 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr2g0803 JmjC 2e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0803 K11446 - gmx:100819576 135.576