Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0791 ATGTCGTTTCGCAGTATTGTTCGTGATGTAAGAGATGGAATTGGAAGTTTATCAATGAGGAGTTTTGAGCTAAGGCTTCCTGGCCATGACAGGGGCAAGTCGAGTAATTCGGTTCATGAGTCGAACGAGCAGCCACATGTAATAGAGAATAGCCGGTGGGCTGGTCTTCCGTCCGAGCTTCTTTGCGATGTAATTAAGAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATGTTGTTGCCTGTGCTGCTGTCTGCAAATCTTGGAGAGAAATGTGTAAAGAAATTGCTAGCAGTGTTGAGTCCAGTGGGAAGATTACTTTCCCGGTTTCCCTAAAGCAGCCTGGTTATAGGGATGGACCTATTCAGTGTTTCATCAAGAGAGACAAATCTAATCTTACTTACCACCTTTACCTTTGTCTTAGTCCCGCATTGCTTGTTGAAAATGGGAAGTTTCTTCTTTCTGCAAAACGGAGTAGAAGAACAACTTGCACGGAGTACGTTATATCGATGGATGCAGATAACATATCAAGGTCTAGCAGCACTTACATTGGAAAACTAAGGTCAAACTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCGGCTGTCTCCACCAGGCCGAAGCCGTAGGTTTAATTCAACAAAGGTTTCTCCAAAAGTCCCTACTGGTAACTACAATATTGCCGAGATCACCTATGAGTTGAACGTCCTTGGTACTAGGGGCCCACGCAGGATGAACTGCATCATGTCCTCGATCCCTATGTCATCCCTCGAGCCCGGTGGAAATGTCCCCGGCCAGCCAGAACTTCTTCCCTGCACCCTCGATGATTCCTTCCGGAGCATATCCTTCTCAAGATCAATCTTCAACTCATCCGAGTTTGGAAGTTCTAGATTCACGGACATAGTTGGGACTGGTAATGAAGAGGAAGGAAAGGACAAACCTATAATTCTCAAGAACAAATCACCAAGATGGCATGAGCAACTGCAATGTTGGTGTCTCAACTTCAGGGGCCGGGTCACCGTTGCCTCGGTAAAGAATTTTCAATTGATTGCTTCGACACAGCCTGCAGCAGCGGTTGGTCCTACTCCTACACCGTCTTCTCAGTCAACACAGTCTGATAATGATAAGGTTATTCTTCAGTTTGGAAAAGTTGGAAAGGATATGTTCACTATGGATTATAGATATCCCTTATCTGCATTTCAGGCTTTTGCTATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAA 1284 0.4447 MSFRSIVRDVRDGIGSLSMRSFELRLPGHDRGKSSNSVHESNEQPHVIENSRWAGLPSELLCDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIASSVESSGKITFPVSLKQPGYRDGPIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRSRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNARLSPPGRSRRFNSTKVSPKVPTGNYNIAEITYELNVLGTRGPRRMNCIMSSIPMSSLEPGGNVPGQPELLPCTLDDSFRSISFSRSIFNSSEFGSSRFTDIVGTGNEEEGKDKPIILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPAAAVGPTPTPSSQSTQSDNDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0791 427 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Tpr2g0791 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Tpr2g0791 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 1 427 - -
Tpr2g0791 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Tpr2g0791 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Tpr2g0791 427 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Tpr2g0791 427 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Tpr2g0791 427 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Tpr2g0791 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Tpr2g0791 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Tpr2g0791 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Tpr2g0791 427 PANTHER TUBBY-RELATED 1 427 - -
Tpr2g0791 427 Pfam Tub family 114 422 IPR000007 -
Tpr2g0791 427 Gene3D - 47 101 - -
Tpr2g0791 427 Pfam F-box domain 53 98 IPR001810 GO:0005515
Tpr2g0791 427 Gene3D Tubby Protein; Chain A 110 427 IPR025659 -
Tpr2g0791 427 SUPERFAMILY F-box domain 41 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0791 Tpr-Chr2 9618330 9622384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0791 1 427 TUB Transcription Factor Family AT1G76900 66.885 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr2g0791 Tub 1e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0791 K19600 - qsu:111992792 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0791 2 9618330 9622384 Tpr1g0851 1 7233882 7237866 PCT