Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0771 ATGGCATCTAGTGGCACCTTCCACATTAATTTCATTTTCATCGAAGAAAATTTGCCCATAAAAATCAATGATAAAGTCTCAATCAATGTGACCAATGAAACATTGTTGGTTCCTAGCAACATTTTATGCAAGTGTGATGGAAGAACAATCTTAAAAAAGGGAAACAATAATCCTTTATATGGCTACTTTTCATCCTTGCCTATATTTCATCCAATATTGAAAGAAATTTTGCCTCATATTGGTGAATGTGCTAGGCAAATGTCTTCATATGACTCTTGGGAGATGGATATTATGCTTTTTGTTGGTGATGTTACTACATGGAATATTAAAGATCATAGTCATATGAATCAAGAAGATCACCAACATGCATGTTTTGCATCTAAATTTATTGTGGATTCTTTGGAGAAAGCTGATATAGATCAAGATTCTTGTTATTCTATAAAACAATGCACATTTTGTTTGGAAAGTGGTTCGAAGATTGAATTTGTTAAGACGAAGTGCTTGCATATTTTTCACAAAGATTGCATTTCGCAGTGGCTCAAAAAATGCATTACTCAACGATCATTCTTCTGGTGTCCATTGTGCCGGAATTGTCAAATAGTATGA 606 0.335 MASSGTFHINFIFIEENLPIKINDKVSINVTNETLLVPSNILCKCDGRTILKKGNNNPLYGYFSSLPIFHPILKEILPHIGECARQMSSYDSWEMDIMLFVGDVTTWNIKDHSHMNQEDHQHACFASKFIVDSLEKADIDQDSCYSIKQCTFCLESGSKIEFVKTKCLHIFHKDCISQWLKKCITQRSFFWCPLCRNCQIV* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0771 201 Pfam Ring finger domain 149 196 IPR001841 -
Tpr2g0771 201 SMART ring_2 150 195 IPR001841 -
Tpr2g0771 201 ProSiteProfiles Zinc finger RING-type profile. 150 196 IPR001841 -
Tpr2g0771 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 200 IPR013083 -
Tpr2g0771 201 SUPERFAMILY RING/U-box 129 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0771 Tpr-Chr2 9306877 9307482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0771 115 197 C3H Transcription Factor Family AT1G04790 30.233 2.62e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0771 - K16282 mtr:MTR_5g094680 169.859