Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0727 ATGGCGCATAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGTTCTGACTTCCCCATCATCTGCGAATCATGCCTCGGTGACAGCCCCTATGTTCGAATGACGAGGGCTGAGTATGACAAAGAGTGCAAGATTTGTACAAGGCCATTTACTGTTTTTAGATGGAGGCCTGGTCGTGATGCAAGATATAAGAAAAGTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTATGCCTTCTGGATCTTGAATATGGACTTCCAGTCCAAGTCCGCGACACAGCTCTCAGTATCAGTTCTAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGATCGCAAGGCTAGAGCTGGTATAGATTATGAGTCCTCGTTTGGTAAAGCACGCCCAAATGACACTATCTTGAAGCTTCAAAGGACAACACCTTATTACAAAAGAAATCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTACAGACACGAGATGCCAGTAACCGGGGAACTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTTAATGACCCAGTTGCTATGAAGCTACTTGGCAAAGCTGGAGAAATGACATCTCTGGAGGTTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGACAACTTCTATGCCCATGGAGAAATTGAGTCTGTCAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCAAACAAATTGGTTATTAAGGGCCTTAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAGCAAAACCTGAGTCTGATGGCTCTGATCAAGCAAGGCAACAGGCCTCTGTGGCTCATAGTGGGTTGTTGCCTCGTGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAGGAATGCTTTACTATAACAATCCACCTTCTCAGCAGGAAAGGAGCTATTACCCTTCGATGGATCCCCAAAGAATGGGTGCTCTTATTCCATCTCAAGACGGTGCTCCTGGCGGACCTTCTGGATCTGGGGAGAACAAACCCGGTTCTGAAAAGCAGCAAATGCAACATTATGGCCATCCTATGATGCCACCTCCACATGGCCAATATCAGCATCAGTACTATCCTCCATATGGTGGTTACATGCATCCAGTTCCCCCTTATCAACAGTACCCACCACCACCATACAATGCTCCAATGCCTCCACCCCAGCCACATGTTGCAAATCACCCCTATCAACATTCTATGCAACCAGGGTCTTCACAAACAGGGTCTGGACAAGTTGGGTCTGCACCGGCTGAAACTGGAACATCTACATCAGGAGGGTCACAACAACAATGA 1464 0.4672 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEVPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGGMLYYNNPPSQQERSYYPSMDPQRMGALIPSQDGAPGGPSGSGENKPGSEKQQMQHYGHPMMPPPHGQYQHQYYPPYGGYMHPVPPYQQYPPPPYNAPMPPPQPHVANHPYQHSMQPGSSQTGSGQVGSAPAETGTSTSGGSQQQ* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0727 487 MobiDBLite consensus disorder prediction 306 320 - -
Tpr2g0727 487 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 448 IPR039171 GO:0003723
Tpr2g0727 487 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 448 - -
Tpr2g0727 487 MobiDBLite consensus disorder prediction 451 487 - -
Tpr2g0727 487 SUPERFAMILY RNA-binding domain, RBD 222 309 IPR035979 GO:0003676
Tpr2g0727 487 Pfam Torus domain 150 194 IPR032297 -
Tpr2g0727 487 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Tpr2g0727 487 SMART rrm1_1 229 297 IPR000504 GO:0003723
Tpr2g0727 487 MobiDBLite consensus disorder prediction 301 321 - -
Tpr2g0727 487 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Tpr2g0727 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Tpr2g0727 487 MobiDBLite consensus disorder prediction 421 449 - -
Tpr2g0727 487 MobiDBLite consensus disorder prediction 334 360 - -
Tpr2g0727 487 MobiDBLite consensus disorder prediction 334 487 - -
Tpr2g0727 487 CDD RRM_RBM22 227 300 - -
Tpr2g0727 487 Gene3D - 149 212 - -
Tpr2g0727 487 Gene3D - 213 309 IPR012677 -
Tpr2g0727 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Tpr2g0727 487 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0727 Tpr-Chr2 8458626 8464201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0727 224 416 C2H2 Transcription Factor Family AT2G19380 24.762 5.19e-06 47.0