Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0719 ATGTCAAGTCGAGGCGGAAGGGATCGACCTAGGAGGGATTATCCTTCAAGATATGAAGACAATAAGGGTAATAGTGGTACGGGGCGCGGTGGTGGTGGTAGTAGCAGTGGTAACAATGGCAATCCTCCTTCCAGGCATCTTTGGGTTGGGAATCTATCACACAACATTGTAGAGGATGAACTTGCTCATCCTTTTATACGATTTGGACCGCTTGAAAAAGTTGCATTTCAGCCCGGTCGAAGCTATGCTTTCATCAACTTTGAAATGGATGAAGATGCCATTGATGCTATGCGATCGCTGCAAGGTTTTCCTCTTGCTGGCAACCCGCTTAGAATCGAGTTTGCAAAGGCGGACAAGCCATCAACAGTAACACGTGATGAAGATTATTCACGTGATGAACGAAGATCGGCATTAAGGGGATCTCCTTTCTCTCAAAGAGAGATTAGAGGACGTCATGGTAGCCCTGAACCACATTATTCTGACAAATCCAAATTTAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCGGCTCAGTTGAAGGTGGATGAATTAATTTTGGGAAGGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTTCGACATTTCCAGGTCGTAGTTATGCATTTGTTCGCTATAGAAATCAGATGTCAGCATGCAGAGCAATGGATGCTCTCAAGGGAAAGTTATTTGGGAATCCCCGTGTTCATATTTGTTTTGCCAAGAGTGAATCAGGTTCATCAAGCAGTGGGAAGAGCTCATTTGGTGGCCCTCGATCCCCATCATACAAGTCAAGCGGTCGTGGTGGATCTTCCGAGAACTTCAGGCAGGATAGGAGCTTTGGCGGCGAGCAAAACATTAGTTCTCCGAATATGTTCGTGAATTGGGATTCTCGAGATTCTGATGCTTATGACTTTAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTAACACATACGGGCAAAGGAATATTGGAGAGAAGGGCACTCCACTTGGAGTATCACAAGAATTTTATGAACATATAAATAGTCCACCAAGAGAAAGACACTTTCATCAGGGTGATTTTCCACAGAAATATTCTCAAAGGGGTCCATTCTTTGAAGATCTGCAGGGCTTGCCTGAAGATGCTCCCTATCTACATGTTGCTAAAAAACTAAAGAGCGATTCTTCTCCTGAGAGAGAGCTTCCAGAGTATGCTTTCTCTGAGTTAGAAAGACAAAAACATGTTTTCCCAAGATTATTACCTGATTTTCCTCATCATGAGCCTTTTGATAAAAGCTTTGACGCTGGAAATTTCACTTACGGACAAACATTTAATCACCCACCAAATTCACCTCTGGTTCGCATAGACAGACATGAAGGCCGGAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTCCAATCAAATTTTGTTGAGAAAAAAAGATTTACACCTGAACCTGATAATTCATCTTCATCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGCGGGACCCCTATTTGTCGTGCCCGCTGCTTCCCTGTAGGGAAAGTCCTAGATATCGCATTACCGGAATTCTTAGATTGCACTGCAAGAACTAGTCTAGACATGCTGTCCAAGCATTACTACCAAGCTGTTGGAGTCTGGGTTGTTTTCTTTGTGCCAGGAAGCGATGCTGACATTGAATTCTACAATGAGTTTATGCATTATCTGGAGGAAAAGCAGCGGGCTGCGGTTTCCAAGGTGGATGACAAGACCACCTTATTTCTCGTACCTCCATCAGATTTCTCAGAGAAAGTGTTAAAGGTACCTGGTAAGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAATATCCGGGTTTGAACCAAGGTCCTATGCACATTGAAAGAGAAACGAAAAACGAAAACCTATTGTCCTATAATGAGAACATATTGTATCCAAATTCGTCTTATCCATCCGTACGCATGCCTCCAAACCCATCATCTATTTCAGAATTGGGTAATTCTGGTATAAGCAATCTTTCATTTCCGGGAAACAAATTTGAAGCAGCTCCATTCATTTCTGATTCAGCTCATTCTGCGGTTGGCATGCCTGAGTCCTATGATGAAAGAAGTCGCTATTATCCTTCCACCCAGCCACGGACATCCGTACCAAACTGGCCTTCTCAAAATCCACAAAATTTAATCTCGAATAGAACTTTACCTTCACATCAATTCAGCGGCGCCGTTGAACCTATTGCTGACGAGCATCATCACATGAATGTAAGTTCAACTCAACATTTCGGTGGAAATTCTGGTATTCCATTTGGCAGTAATAACAGGTCATCATATCCAGAAATGAGAAATTTTGATCCTTCAACCCCTGTGGGATCCCTGCAGCCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGAAGCAGAGGCAATTGGGAAGCTCTATGAGCACATCTGCAACGAGTGATCCAAGACAGAACAGATTTAACGAGTCGGAAACCTCATCCAGACAATCATATGCTGCAGAAAACAACCTGGCAAGTTCTGAACACTCGACATCTCAGTTTGGTCACGTTCTACAGTTGCAAAAGCAACATCAGATGATGCCAAATGTGCCCCAGTTATCACAGATGGTTCAAAGAGAGGTCAATGGAAATCAGCAGTTAGCAGATAATAGTTTGCAGGATGGTGGAGACGCAGATACACAGAAACGTTTAGAAGCAACCCTAAAGCTGGCTGCTACTCTTCTTCAGCAAGTTCATCAAGGAAACGGGAATTGA 2781 0.4355 MSSRGGRDRPRRDYPSRYEDNKGNSGTGRGGGGSSSGNNGNPPSRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEMDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSTVTRDEDYSRDERRSALRGSPFSQREIRGRHGSPEPHYSDKSKFSDKNPEPSEVLWIGFPAQLKVDELILGRAFSPFGEIEKISTFPGRSYAFVRYRNQMSACRAMDALKGKLFGNPRVHICFAKSESGSSSSGKSSFGGPRSPSYKSSGRGGSSENFRQDRSFGGEQNISSPNMFVNWDSRDSDAYDFNNRGSSWAGGANTYGQRNIGEKGTPLGVSQEFYEHINSPPRERHFHQGDFPQKYSQRGPFFEDLQGLPEDAPYLHVAKKLKSDSSPERELPEYAFSELERQKHVFPRLLPDFPHHEPFDKSFDAGNFTYGQTFNHPPNSPLVRIDRHEGRKPYDSFQMGPGALQSNFVEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGLNQGPMHIERETKNENLLSYNENILYPNSSYPSVRMPPNPSSISELGNSGISNLSFPGNKFEAAPFISDSAHSAVGMPESYDERSRYYPSTQPRTSVPNWPSQNPQNLISNRTLPSHQFSGAVEPIADEHHHMNVSSTQHFGGNSGIPFGSNNRSSYPEMRNFDPSTPVGSLQPEQLAQLAASLLEKQRQLGSSMSTSATSDPRQNRFNESETSSRQSYAAENNLASSEHSTSQFGHVLQLQKQHQMMPNVPQLSQMVQREVNGNQQLADNSLQDGGDADTQKRLEATLKLAATLLQQVHQGNGN* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0719 926 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 117 IPR000504 GO:0003723
Tpr2g0719 926 MobiDBLite consensus disorder prediction 704 723 - -
Tpr2g0719 926 MobiDBLite consensus disorder prediction 253 279 - -
Tpr2g0719 926 PANTHER RNA RECOGNITION MOTIF-CONTAINING 16 916 - -
Tpr2g0719 926 MobiDBLite consensus disorder prediction 118 167 - -
Tpr2g0719 926 SMART rrm1_1 46 113 IPR000504 GO:0003723
Tpr2g0719 926 SMART rrm1_1 175 243 IPR000504 GO:0003723
Tpr2g0719 926 PANTHER RNA-BINDING PROTEIN SPENITO 16 916 - -
Tpr2g0719 926 MobiDBLite consensus disorder prediction 1 42 - -
Tpr2g0719 926 Pfam SPOC domain 490 605 IPR012921 -
Tpr2g0719 926 MobiDBLite consensus disorder prediction 706 723 - -
Tpr2g0719 926 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 247 IPR000504 GO:0003723
Tpr2g0719 926 SUPERFAMILY RNA-binding domain, RBD 186 275 IPR035979 GO:0003676
Tpr2g0719 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 239 IPR000504 GO:0003723
Tpr2g0719 926 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 110 IPR000504 GO:0003723
Tpr2g0719 926 MobiDBLite consensus disorder prediction 809 863 - -
Tpr2g0719 926 Gene3D - 33 124 IPR012677 -
Tpr2g0719 926 SUPERFAMILY RNA-binding domain, RBD 31 126 IPR035979 GO:0003676
Tpr2g0719 926 MobiDBLite consensus disorder prediction 1 19 - -
Tpr2g0719 926 Gene3D - 153 284 IPR012677 -
Tpr2g0719 926 MobiDBLite consensus disorder prediction 117 167 - -
Tpr2g0719 926 MobiDBLite consensus disorder prediction 20 42 - -
Tpr2g0719 926 CDD RRM3_Spen 47 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0719 Tpr-Chr2 8312101 8321576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0719 46 279 Eukaryotic Initiation Factors Gene Family AT4G34110 23.643 8.07e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0719 - - gmx:100811668 1215.68