Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0684 ATGCAAAGCCAAAAACAAGAGAAGAAGAAGAAGATGGGGAGGGGTAAGATTGAGATAAAAAGGATTGAAAAATCAAGCAACAGGCAAGTTACTTTTTCAAAGAGGAAGAATGGAATCCTTAAGAAGGCAAAAGAAATAAGTATTCTTTGTGATTCTCAAGTTTCCCTTATTCTCTCTGGTGAATCTGGAAAGATCCATGAATACATCAGTCCCTCCACAACATTGATTGATGTCCTAGACAGATACCAGAGAGACTCAGGGAAAACACTGTGGGATGCTGAGCATGAGAGTCTTAGCAATGAAATTGATAGAATAAAAAAGGAGAATGAAAGCATGGAAATTCAACTGAGGCACTTGAAGGGAGAGAACATTACCTCATTGAAGTTCAAAGAGCTTATGGACCTTGAGAGTGCCCTTGAAAATGGCCTTACCTGTGTTGGCGACAAAAAGATGGAAGTGTATAGGATGTTAAAGAGAAATGGTGAGATTTTGGAGGAACAAAATAAGGAACTAGATTTGCTTCTGCAACAGCATATGGCAGTGGAAGATGTGGGAAACATGCATGATGCATCAGATTATAAGTGA 585 0.3897 MQSQKQEKKKKMGRGKIEIKRIEKSSNRQVTFSKRKNGILKKAKEISILCDSQVSLILSGESGKIHEYISPSTTLIDVLDRYQRDSGKTLWDAEHESLSNEIDRIKKENESMEIQLRHLKGENITSLKFKELMDLESALENGLTCVGDKKMEVYRMLKRNGEILEEQNKELDLLLQQHMAVEDVGNMHDASDYK* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0684 194 ProSitePatterns MADS-box domain signature. 14 68 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 ProSiteProfiles K-box domain profile. 95 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g0684 194 MobiDBLite consensus disorder prediction 1 20 - -
Tpr2g0684 194 Pfam K-box region 93 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g0684 194 CDD MADS_MEF2_like 13 91 IPR033896 GO:0000977|GO:0045944
Tpr2g0684 194 PANTHER MADS-BOX TRANSCRIPTION FACTOR 12 188 - -
Tpr2g0684 194 SUPERFAMILY SRF-like 13 107 IPR036879 GO:0003677|GO:0046983
Tpr2g0684 194 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 188 - -
Tpr2g0684 194 Gene3D - 25 117 IPR036879 GO:0003677|GO:0046983
Tpr2g0684 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 Coils Coil 164 184 - -
Tpr2g0684 194 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Tpr2g0684 194 Coils Coil 88 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0684 Tpr-Chr2 7787646 7788262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0684 12 154 MADS-box Gene Family AT5G20240 60.140 4.68e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g0684 K-box 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0684 K09264 - gmx:100306010 291.197