Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0656 ATGGGAAGGGGTAAGTTTGAGTTGAAAAGGATTGAAAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGGAAGAATGGAATCCTTAAGAAGGCAAAAGAAATAAGTATTCTTTGTGATTCTCAAGTTTCCCTTATTCTCTCTGGTGAATCTGGAAAGATCCATGAATACATCAGTCCCTCCACCACATTGATTGATGTCCTAGACAGATACCAGAGAGCCACAGGGAAAACACTATGGAATGCTGAGCATGAGAGCCTTAGCAATGAAATTGATAGGATCAAAAAGGAGAATGAAAACATGGAAATTGAGCTGAGGTACTTGAAGGGAGAGAACATTACCTCATTGAATTTCAAAGAGCTTATGGCCCTTGAGACTGCCCTTGAGAATGGCCTTACCAGTGTTCGTGACAAAAAGATGGAAGTGTATAGGATGGTCAAGAGAAATGGTGAGATTTTGGAGGAACAGAATAAGGAATTAGATTTGCTTCTGCAACAGCATATGGCAGTGGAAGATGGGGAAACATGCATGCATCAGATCATAAGTAATTCAGTCTGCTAG 561 0.4029 MGRGKFELKRIENSSNRQVTYSKRKNGILKKAKEISILCDSQVSLILSGESGKIHEYISPSTTLIDVLDRYQRATGKTLWNAEHESLSNEIDRIKKENENMEIELRYLKGENITSLNFKELMALETALENGLTSVRDKKMEVYRMVKRNGEILEEQNKELDLLLQQHMAVEDGETCMHQIISNSVC* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0656 186 ProSiteProfiles K-box domain profile. 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g0656 186 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 174 - -
Tpr2g0656 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
Tpr2g0656 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr2g0656 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr2g0656 186 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Tpr2g0656 186 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Tpr2g0656 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr2g0656 186 Coils Coil 77 111 - -
Tpr2g0656 186 Pfam K-box region 82 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr2g0656 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr2g0656 186 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Tpr2g0656 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr2g0656 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr2g0656 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0656 Tpr-Chr2 7386252 7386828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0656 1 143 MADS-box Gene Family AT5G20240 58.741 1.41e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr2g0656 K-box 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0656 K09264 - gmx:100306010 286.574