Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr2g0632 | ATGTCTCGTGTGTATGTGGGTAATCTGGATTCTAGAGTTTCGGAGAGGGACCTTGAAGATGAATTCCGTGTTTATGGTGTTATTCGAAGTGTCTGGGTTGCTAGGAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCGCAGGATGCTATTCGCGAATTAGATGGTAAGAATGGCTGGAGGGTAGAGCTCTCTCACAATTCTAGAAATGGTGGTAGCGGTGGAGGTGGAGGAGGAGGAGGCGGTCGTGGTCGCGGAGGTGGTGGCGGTGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGAGGAAGACGCCGTAGCCGTAGTCCACCTAGATTTCGAAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCACCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGCGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCAGAAGCAGAAGTTAG | 573 | 0.5305 | MSRVYVGNLDSRVSERDLEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRNGGSGGGGGGGGGRGRGGGGGGSDLKCYECGEPGHFARECRNRGGGGGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS* | 191 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr2g0632 | 190 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 73 | IPR000504 | GO:0003723 | |
Tpr2g0632 | 190 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 182 | - | - | |
Tpr2g0632 | 190 | ProSiteProfiles | Zinc finger CCHC-type profile. | 99 | 115 | IPR001878 | GO:0003676|GO:0008270 | |
Tpr2g0632 | 190 | SUPERFAMILY | Retrovirus zinc finger-like domains | 91 | 117 | IPR036875 | GO:0003676|GO:0008270 | |
Tpr2g0632 | 190 | SMART | c2hcfinal6 | 99 | 115 | IPR001878 | GO:0003676|GO:0008270 | |
Tpr2g0632 | 190 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 96 | IPR035979 | GO:0003676 | |
Tpr2g0632 | 190 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 | 2 | 182 | - | - | |
Tpr2g0632 | 190 | MobiDBLite | consensus disorder prediction | 104 | 119 | - | - | |
Tpr2g0632 | 190 | MobiDBLite | consensus disorder prediction | 66 | 190 | - | - | |
Tpr2g0632 | 190 | Pfam | Zinc knuckle | 99 | 114 | IPR001878 | GO:0003676|GO:0008270 | |
Tpr2g0632 | 190 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Tpr2g0632 | 190 | Gene3D | - | 1 | 99 | IPR012677 | - | |
Tpr2g0632 | 190 | CDD | RRM_SRSF3_like | 3 | 71 | - | - | |
Tpr2g0632 | 190 | Gene3D | - | 100 | 153 | - | - | |
Tpr2g0632 | 190 | SMART | rrm1_1 | 3 | 69 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr2g0632 | Tpr-Chr2 | 7000619 | 7003832 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr2g0632 | 2 | 61 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 37.500 | 6.27e-06 | 43.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr2g0632 | K12896 | - | sspl:121745482 | 219.164 |