LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g0632	ATGTCTCGTGTGTATGTGGGTAATCTGGATTCTAGAGTTTCGGAGAGGGACCTTGAAGATGAATTCCGTGTTTATGGTGTTATTCGAAGTGTCTGGGTTGCTAGGAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCGCAGGATGCTATTCGCGAATTAGATGGTAAGAATGGCTGGAGGGTAGAGCTCTCTCACAATTCTAGAAATGGTGGTAGCGGTGGAGGTGGAGGAGGAGGAGGCGGTCGTGGTCGCGGAGGTGGTGGCGGTGGTTCTGATTTGAAGTGTTATGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGAGGAAGACGCCGTAGCCGTAGTCCACCTAGATTTCGAAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGTGGGCGGTCACCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGCGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCAGAAGCAGAAGTTAG	573	0.5305	MSRVYVGNLDSRVSERDLEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRNGGSGGGGGGGGGRGRGGGGGGSDLKCYECGEPGHFARECRNRGGGGGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS*	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g0632	190	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Tpr2g0632	190	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	182	-	-
	Tpr2g0632	190	ProSiteProfiles	Zinc finger CCHC-type profile.	99	115	IPR001878	GO:0003676\|GO:0008270
	Tpr2g0632	190	SUPERFAMILY	Retrovirus zinc finger-like domains	91	117	IPR036875	GO:0003676\|GO:0008270
	Tpr2g0632	190	SMART	c2hcfinal6	99	115	IPR001878	GO:0003676\|GO:0008270
	Tpr2g0632	190	SUPERFAMILY	RNA-binding domain, RBD	3	96	IPR035979	GO:0003676
	Tpr2g0632	190	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	182	-	-
	Tpr2g0632	190	MobiDBLite	consensus disorder prediction	104	119	-	-
	Tpr2g0632	190	MobiDBLite	consensus disorder prediction	66	190	-	-
	Tpr2g0632	190	Pfam	Zinc knuckle	99	114	IPR001878	GO:0003676\|GO:0008270
	Tpr2g0632	190	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Tpr2g0632	190	Gene3D	-	1	99	IPR012677	-
	Tpr2g0632	190	CDD	RRM_SRSF3_like	3	71	-	-
	Tpr2g0632	190	Gene3D	-	100	153	-	-
	Tpr2g0632	190	SMART	rrm1_1	3	69	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g0632	Tpr-Chr2	7000619	7003832	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g0632	2	61	Eukaryotic Initiation Factors Gene Family	AT1G49760	37.500	6.27e-06	43.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g0632	K12896		-	sspl:121745482	219.164