LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr2g0605	ATGGTGAAACCAATATTTCTAACACACCATATCCGTTTCATAACAACCTCTTCTTCTTCTAGATTCTTCCATCCATTGTCCATCTCTAAATCACCACTCCGATTCCTCTCCACAACCCCATACCCACTCCAATACGAACTTATCATTAACCGCCCCGACCTCCCTAAACCCAACCCTCACCGTCGAACCCAAAAACCCAACGCTTCACCCGAACCAACCCAACCCGACTCTCTCCAAAGCTGGGCCGACGATAAACTAACAACAACCGAACCCGGTTCATCTGAACTTGATAAAGCCAAGAGGAAATACTATAACAAAAGGAGGAAGAGAATGTATGGTTCTGATTCCGATTCCGATGATCATCGGAGAAATGAAGAACAATTTGTTGAATTGAAACCTGAAGTTGTTGAGTTAAGAACTTTGCATAGAAGAGAAGAAGAATTGTATTTTTATGATGCTTTTAGTTATCCTTGGGAGAAAAATAAACATTATAAAATGGTTTATCAATTGGAGAAAAAGTTTTTTCCTCATCAGTGTTTGGATAAAGCTTTTCTTAAACCAGGTCAATCTAATCCGGTTTCCAATTTTTCAAATTCCAAAAATTCAAATGCAAATGTTAGGAACAAAAAAGTTGGTGTTTTTGGTGGTGTTGGTGGTGTTGTGGAGGATAAAGATGAGGTTGGTGATAACAAGTTGGTGTTTTTTGAGGAGAATGTGAAAGGGGAAGAAGAAAGAGAAAAGGAAAAGGAAAAGGGTAAGAAGGGTGAGAAGAAGGTCGAAGAGTTTTTTAAGGGTTTGAAGAAAGATGTTGAAATTGTAGAGCCATTTTTTTCTTCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATAGTCAACATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTTCGCCGCCTTGTCAAAGTGAAAAAGGTAGGTCATGCCGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCCATGTTTTCTGCTATTAAAGTTGGAGGTGAAAAGATGTACGACAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAGTTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGGCAAAATTTGATTTTTAGAGTGACTTGTTCTAAAGGAACATATATTCGGTCACTCTGTGCAGATTTCGGAAAGGCTCTTGGCAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGACAATATTTAGCAGATGATGCATGGGACTTTCAAGAACTGGAAGAGGCTATCACCAAAACTTATCTTTAA	1539	0.4048	MVKPIFLTHHIRFITTSSSSRFFHPLSISKSPLRFLSTTPYPLQYELIINRPDLPKPNPHRRTQKPNASPEPTQPDSLQSWADDKLTTTEPGSSELDKAKRKYYNKRRKRMYGSDSDSDDHRRNEEQFVELKPEVVELRTLHRREEELYFYDAFSYPWEKNKHYKMVYQLEKKFFPHQCLDKAFLKPGQSNPVSNFSNSKNSNANVRNKKVGVFGGVGGVVEDKDEVGDNKLVFFEENVKGEEEREKEKEKGKKGEKKVEEFFKGLKKDVEIVEPFFSSRRTGLPPVWDSQHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISVFQFDIERSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWDFQELEEAITKTYL*	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr2g0605	512	Pfam	TruB family pseudouridylate synthase (N terminal domain)	314	464	IPR002501	GO:0006396
	Tpr2g0605	512	Gene3D	Pseudouridine synthase	288	511	-	-
	Tpr2g0605	512	MobiDBLite	consensus disorder prediction	50	125	-	-
	Tpr2g0605	512	MobiDBLite	consensus disorder prediction	62	89	-	-
	Tpr2g0605	512	CDD	PseudoU_synth_EcTruB	295	506	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Tpr2g0605	512	TIGRFAM	TruB: tRNA pseudouridine(55) synthase	294	503	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Tpr2g0605	512	SUPERFAMILY	Pseudouridine synthase	294	507	IPR020103	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Tpr2g0605	512	Hamap	tRNA pseudouridine synthase B [truB].	292	512	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Tpr2g0605	512	Pfam	tRNA pseudouridylate synthase B C-terminal domain	465	508	IPR032819	-
	Tpr2g0605	512	PANTHER	TRNA-PSEUDOURIDINE SYNTHASE	268	510	IPR014780	GO:0001522\|GO:0003723\|GO:0009451\|GO:0009982
	Tpr2g0605	512	MobiDBLite	consensus disorder prediction	109	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr2g0605	Tpr-Chr2	6742842	6748498	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr2g0605	295	486	NAC Transcription Factor Family	AT3G57150	32.812	9.47e-20	90.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr2g0605	K03177		-	gmx:100793939	645.966

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr2g0605	2	6742842	6748498	Tpr2g0605	2	6742842	6748498	ECH