Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0583 ATGGAATCACCTGGAAAAGACCATATGATTGGAAGCGGAGAACAAAACGACGTTGGTAGAGTCTTTAACCACAGAGATGAACACGAACATGAACAACAACACCATAACTCTCAACCCCTAACCGGTGATGGTGCAAGTCCTGGAAAGATATTTATAGGCGGTTTAGCGAGAGAAACGACAATTGCTCAATTTATCAAACACTTTGGTAAATATGGTGAGATTACTGATTCCGTAATCATGAAGGACAGGAAAACTGGGCAGCCTCGTGGATTCGGGTTTATTACTTATGCTGATCCGTCGGTGGTTGATAAAGTCATTGAAGATTCTCATATCATCAATGCCAAACAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATATTTGTAGGTGGTATCCCTTCACATGTGACTGAAGATGAATTCAGAGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACGCTACCAATAGATCCCGTGGCTTTGGGTTTGTTACCTTTGACACTGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATTGAGTTTGCTGGCACTCAGGTGGAAATCAAGAAGGCTGAACCAAAAAAGGCAAACCCACCACCTCCATCATCTAAGCGCTACAATGACTCAAGGTCTTCCTACGGCAGTGGTGGGTATGGCGATGCTTATGATGGATTTGGCGGTAGCTTTGGTGCTGGTAGTGCTTACAGCAGGTCAGGCAGTGTCTATGGTGGTAGGGGAGGTCCTTATGGTGGTTATGGAAGTGAATTTGCTGGCTATGGGGGATATGCTGGAGCTATGGGAGGACCCTACAGAGGAGATCCTTCCCTAGGGTATGCCGGTCGTTATGGTGGTAGCTTTAGCAGAGGCTATGATCTTAGTGGGTACGGGGGACCTGGTGAGAGTTACGGAGCATATGGTGGTGCTGGTGGCGGAGCTGCGGCTGGAGGCGGTTCTTCCGGTGCTGGTGCGTATCAAGGTGGCTACGATGCCAGCCTTGGAGGTGGTTATGGAGGAGGAGCTAGTGGAGGCTCCTTCTATGGGAGCCGAGGAGGATATGGTGGCGCCGGTCGATATCATCCGTATGGAAGATAG 1155 0.4788 MESPGKDHMIGSGEQNDVGRVFNHRDEHEHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDSHIINAKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSHVTEDEFRDFFTRYGEVKDHQIMRDHATNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANPPPPSSKRYNDSRSSYGSGGYGDAYDGFGGSFGAGSAYSRSGSVYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLGYAGRYGGSFSRGYDLSGYGGPGESYGAYGGAGGGAAAGGGSSGAGAYQGGYDASLGGGYGGGASGGSFYGSRGGYGGAGRYHPYGR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0583 384 SMART rrm1_1 137 210 IPR000504 GO:0003723
Tpr2g0583 384 SMART rrm1_1 49 120 IPR000504 GO:0003723
Tpr2g0583 384 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 384 - -
Tpr2g0583 384 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 9 384 - -
Tpr2g0583 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Tpr2g0583 384 Gene3D - 136 219 IPR012677 -
Tpr2g0583 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 124 IPR000504 GO:0003723
Tpr2g0583 384 SUPERFAMILY RNA-binding domain, RBD 132 240 IPR035979 GO:0003676
Tpr2g0583 384 MobiDBLite consensus disorder prediction 210 232 - -
Tpr2g0583 384 MobiDBLite consensus disorder prediction 26 45 - -
Tpr2g0583 384 SUPERFAMILY RNA-binding domain, RBD 38 126 IPR035979 GO:0003676
Tpr2g0583 384 Gene3D - 14 131 IPR012677 -
Tpr2g0583 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 111 IPR000504 GO:0003723
Tpr2g0583 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 207 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0583 Tpr-Chr2 6532398 6535987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0583 48 204 Eukaryotic Initiation Factors Gene Family AT1G71770 26.590 1.98e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0583 K12741 - gmx:100793209 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0583 2 6532398 6535987 Tpr2g0583 2 6532398 6535987 ECH