Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0572 ATGATGGCTTCTAGCTACTCAAGTTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGTAATCAAGATTGCATTTTTGCACCTTATTTTCCACCAGAAGAGCCTCAAAAATTTGTGAATGTTCACAAAATATTTGGTGCAAGCAATGTTAGTAAATTTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAATTCTTTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGTGCTACAAAAACAACTTATTAGGCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTAGCATTACTCATCAAGGTTCAATTTCTCTTGGCCTTGGACATGTTGATCACTCTAATGGTTTTCTTAATTATCCTTCTAATTTGAGCAATGATATGTGA 432 0.3449 MMASSYSSSPCAACKFLRRKCNQDCIFAPYFPPEEPQKFVNVHKIFGASNVSKFLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGAISVLQKQLIRLQKELDATNADLISITHQGSISLGLGHVDHSNGFLNYPSNLSNDM* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0572 143 Coils Coil 89 109 - -
Tpr2g0572 143 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Tpr2g0572 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 114 - -
Tpr2g0572 143 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Tpr2g0572 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0572 Tpr-Chr2 6424071 6426248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0572 4 111 AS2 family AT3G27650 80.556 7.93e-66 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr2g0572 LOB 9.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0572 - - gmx:100788656 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0572 2 6424071 6426248 Tpr2g0572 2 6424071 6426248 ECH