Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0571 ATGATGACCTCTAGCTACTCAAATTCTCCATGTGCTGCTTGCAAATTTCTAAGAAGAAAATGTAATCAAGATTGCATTTTTGCACCTTACTTCCCACCAGAAGAGCCTAAAAAATTTGCCAATGTTCACAAAGTATTTGGTGCAAGTAATGTTAGTAAACTTCTAAATGAAGTTTTACCTCATCAAAGGGAAGATACAGTGAATTCTTTAGCTTATGAAGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGATTTATTTCAGGGCTACAAAGACAACTCCTTGGTCTTCAAAAGGAACTTGATGCTACAAATGCTGATTTGATTCAATTTACTATTCAAGGTTCTTCTTCTCTTGGTCTTGGACATGTTGATTACTCTAATGGTTTTTATAATTACCCTTCTAATTTTGAGCAATGA 426 0.3451 MMTSSYSNSPCAACKFLRRKCNQDCIFAPYFPPEEPKKFANVHKVFGASNVSKLLNEVLPHQREDTVNSLAYEAEARIKDPVYGCVGFISGLQRQLLGLQKELDATNADLIQFTIQGSSSLGLGHVDYSNGFYNYPSNFEQ* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0571 141 Coils Coil 89 109 - -
Tpr2g0571 141 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Tpr2g0571 141 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 116 - -
Tpr2g0571 141 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Tpr2g0571 141 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0571 Tpr-Chr2 6410337 6411848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0571 1 114 AS2 family AT3G27650 76.316 2.19e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr2g0571 LOB 9.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0571 - - pop:7487871 210.305