Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0567 ATGGTCACTCCAAATTCCAAATCGATCTTCAACATCGTAACTTCACGAGAGCTTAATTCCTTTCAAGTTCGAAAACGACCTCGCATGGATGGTTGGGTTCATGGTGTTTTCGAGATGGGAGCTTTATCTACACAGCATAACGGTGAAGATATTGTTCCTCTTGCTCTCTCTTTTGCTAAGACATCGAAATTTTCGCACATTCTTGCTTTATCCAATGAGGAAGGATATGTTAGTTTGTTTGATACTCGTCGTAAATTACAGCCCTCGTGCTATGAAGAAAATGCAGATAATGCAAGGATTTGTGAATGGAGTGCACATAATAATGCTGTTTTTGATGTCAATTGGATTAAGGATGATACACAGATCCTTACTGCTTCTGGTGATCAAACGGTGAAGATATGGGATGTTCAAGAAAAGAAGTGTCTTGGAGTGTTAACAGGGCACACGGGGAGTGTGAAATCTTTTTGTTCTCATCCAACTAATTCTGATATTATCGTCTCTTGTTCAAGAGATGGATCCTTTCGGCTTTGGGATTTAAGATGTAACTCCAATACTAAGAACAGGCATGGAGAAGTTAGCATAAGTTCAACAGCTGTTGTAAAAGGAGCACATCTTTCATATCAAGTATACCGAGTAAGGGGGCGCAAGGCCAGGGGTGCTTCCATGAGTATTACATCTGCCCTTTGGCTCAAGGATGAAGTTTCCATAGCCACTGCCGGGGCAGCCGATAGTGTGCTGAAGTTTTGGGATACCAGAAATTTAAAAAGTATTGTTACACAAGCATGTCCTCAACCCGAGTCAACAGGAAAGCAAAGATTACATGGTATATCTAGCTTGTCCCAAGATGATAGTGGACTTTTGCTTTCAGCTTCCTGCATGGATAGCCGAGTTTATCTATATAATACACTTCAACTTGAAAAAGGTCCTTTAAGACATTTTGAAGGAGGTCGTATAGAATCATTTTTTGTGAAGGCCGCAATTAGCCCTGATGCATCTAGCATAGTGTGCGGTTCCAGTACCGGAAAAGCATATGTTTGGCAGGTTGACAAGCCTCACGTGCCACCTACTATTTTGAAGAGCCATGAGGATGATGAGGAAGTTACTGCAGTTGACTGGTGCCGCTCTGATATCGGAAAACTAGCAACTGCATCCGATGATTTCACAATCCGAATATGGAATCAACGCAGTTATGTTAGCACAACAAAGTATCCATTTTCCATTCGAAGAAGAGTTATGGCCATCCCTAGAACAGAGTGCAAAATGCTATTAAACAATGAAGAAATTTGCCCCAAGTCAGGTTTCGATGGTCTCGAAACACCGCACCACCCAATGAAGTCAGCCAATCCAATCACACCACCTAAAACGTCTACATCTGAAGGCCATAAGAACCAACTTTCATCAGAATTTGATCTAACCGTATCTCCTAAAAACACTCCAGAGTCTGCTATGAAGAGTCCTTCATCTGTATTGAACCCACCACCCTCCCTAAAAAGAACTATCCGCGACTACTTTGTAGCATCTTCGTGA 1527 0.4191 MVTPNSKSIFNIVTSRELNSFQVRKRPRMDGWVHGVFEMGALSTQHNGEDIVPLALSFAKTSKFSHILALSNEEGYVSLFDTRRKLQPSCYEENADNARICEWSAHNNAVFDVNWIKDDTQILTASGDQTVKIWDVQEKKCLGVLTGHTGSVKSFCSHPTNSDIIVSCSRDGSFRLWDLRCNSNTKNRHGEVSISSTAVVKGAHLSYQVYRVRGRKARGASMSITSALWLKDEVSIATAGAADSVLKFWDTRNLKSIVTQACPQPESTGKQRLHGISSLSQDDSGLLLSASCMDSRVYLYNTLQLEKGPLRHFEGGRIESFFVKAAISPDASSIVCGSSTGKAYVWQVDKPHVPPTILKSHEDDEEVTAVDWCRSDIGKLATASDDFTIRIWNQRSYVSTTKYPFSIRRRVMAIPRTECKMLLNNEEICPKSGFDGLETPHHPMKSANPITPPKTSTSEGHKNQLSSEFDLTVSPKNTPESAMKSPSSVLNPPPSLKRTIRDYFVASS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0567 508 MobiDBLite consensus disorder prediction 449 494 - -
Tpr2g0567 508 PANTHER BNAA06G31940D PROTEIN 4 506 - -
Tpr2g0567 508 Pfam WD domain, G-beta repeat 140 178 IPR001680 GO:0005515
Tpr2g0567 508 Pfam WD domain, G-beta repeat 102 135 IPR001680 GO:0005515
Tpr2g0567 508 Pfam WD domain, G-beta repeat 356 393 IPR001680 GO:0005515
Tpr2g0567 508 ProSitePatterns Trp-Asp (WD) repeats signature. 122 136 IPR019775 -
Tpr2g0567 508 Gene3D - 32 189 IPR015943 GO:0005515
Tpr2g0567 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 187 IPR001680 GO:0005515
Tpr2g0567 508 PRINTS G protein beta WD-40 repeat signature 122 136 IPR020472 -
Tpr2g0567 508 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Tpr2g0567 508 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Tpr2g0567 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 180 - -
Tpr2g0567 508 MobiDBLite consensus disorder prediction 446 495 - -
Tpr2g0567 508 Gene3D - 203 433 IPR015943 GO:0005515
Tpr2g0567 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 103 137 - -
Tpr2g0567 508 SUPERFAMILY WD40 repeat-like 62 404 IPR036322 GO:0005515
Tpr2g0567 508 SMART WD40_4 306 347 IPR001680 GO:0005515
Tpr2g0567 508 SMART WD40_4 96 135 IPR001680 GO:0005515
Tpr2g0567 508 SMART WD40_4 138 178 IPR001680 GO:0005515
Tpr2g0567 508 SMART WD40_4 351 393 IPR001680 GO:0005515
Tpr2g0567 508 SMART WD40_4 266 301 IPR001680 GO:0005515
Tpr2g0567 508 SMART WD40_4 210 250 IPR001680 GO:0005515
Tpr2g0567 508 PANTHER LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN 4 506 - -
Tpr2g0567 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 103 144 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0567 Tpr-Chr2 6363063 6367272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0567 104 306 U-box Gene Family AT2G33340 24.434 3.59e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0567 K11790 - gmx:100775857 670.618