Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0555 ATGGCTGCTACAGCAACTGCCTCAGTGGGTCCCCGGTATGCACCACCTGATCCCACACTTCCTAAACCATGGAAGGGTCTTGTGGATGGCAAGACTGGCTATCTTTACTTTTGGAATCCTGAGACTAATATCACTCAGTATGAGAGGCCTTCGAGCTCCGCTGCCCCACCGAAGTCTTCTTCAGTCCCTAACTCTTCTGTCCAGGTTCAGCAATCATCTCAAGGACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGGAATGGAAATGGTGGGTCAAATGAAGGTGGATCCAGGAACCATCAGAGTTCCAAAGGTGCCACCTCTCAAGATAATGTTGCAAATGGAAATGTTAGTTCTATCAAAGCTCATGTGGCACCAGATACAGGACCTGCATTATCTCCAGAGGCTTATAGACGTCGTCATGAGATCACTGTTACGGGAGATAATGTTCCTGCTCCCGTGACATCATTTGCATCCTCTGGCTTTCCATCTGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCACAATCATGGCCCATTGCCCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGAAAAACCTTGGGGTATTTGCTTCCAGCATTTATTCATCTCAAGCGTACTAATAATAACGCCAAAATGGGCCCCACTGTTTTGGTACTTTCACCAACAAGGGAGTTGGCAACACAGATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTGCCTGCACTTGCTTGTATGGAGGAGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCCTGAATGATATTCTTGAGATGAGGAGAATCACGCTTCACCAGGTCTCTTACCTAGTGCTAGATGAGGCAGACCGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGAGGTGCCCGCTCGCAGGCAAACTCTCATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAGAATTGCAGCTGATCTGCTGGTCAATCCTGTCCAAGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAACAAATCCATCACTCAGCATATTGAAGTTTTGGCACATATGGAGAAACAGAGACGACTGGAAAGTATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTAATCTTACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAAGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCTGTGCTTGTAGCCACAGATGTTGCAGCTCGTGGACTGGATGTGAAAGACATTAGAGTGGTTGTCAACTATGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATTGGAAGGACTGGTAGGGCTGGAGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATAAAAATCTTAGAGGGTGCAAACCAGAAAGTCCCTGCAGAACTTCGTGAGTTGTCATCCCGGGGTGGTGGTGGGTTTAGCAGGTCCAAATATCGTTCTGGTGGTCGTGGTGATTCTGGATTTGGTGCAAAGAGTTATGACTCTGGGTATGGTGGAAGGAGTAATGATGCAGGATATGGTGGAAGAGGTAGTGATTCAAATTATGGTGGAAGGGGTGGATATGGGTCTTCTGCTGCTTTTGGAAGAGGTGGAGGCCGTGGATTTGACTATGACTCACAGAGGAATGAAAGAGATCGAAGCCCTGAGAGAGGATCTAGCTGGAGTGATCGCTTCAAAACTGTCAATCGCGAACGCAGCCGCAGTCCTGCCAAGGCTGCACCATCTCAAAATGGCCCAGTCAGCTTTCACCAAGCAATGATGCAACGCAGTGGAGGAGGTGGCGATCGTAACAAGAGCTTTAACCGGGAGCGAAGTCGCAGTCCGGCAGGCCGTGAACGATCCCCTTCTTCCCCTGGTGGCGGTAGGTCCAACAACAGTCCAAAGAAAGGGTGGGGAGGATCTTCAGGTGATGGAAGAAACGGTGGTTCTCATTCATACAATGGAGAAATGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATTGGTCATGATGATTCTACATATCAAAGTGCAAATTAG 2229 0.4684 MAATATASVGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNITQYERPSSSAAPPKSSSVPNSSVQVQQSSQGRGRSPDFSDRYDRNGNGGSNEGGSRNHQSSKGATSQDNVANGNVSSIKAHVAPDTGPALSPEAYRRRHEITVTGDNVPAPVTSFASSGFPSEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRITLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPAELRELSSRGGGGFSRSKYRSGGRGDSGFGAKSYDSGYGGRSNDAGYGGRGSDSNYGGRGGYGSSAAFGRGGGRGFDYDSQRNERDRSPERGSSWSDRFKTVNRERSRSPAKAAPSQNGPVSFHQAMMQRSGGGGDRNKSFNRERSRSPAGRERSPSSPGGGRSNNSPKKGWGGSSGDGRNGGSHSYNGEMEEGMIPDEEGMIGHDDSTYQSAN* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0555 742 Pfam Helicase conserved C-terminal domain 388 496 IPR001650 -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 665 679 - -
Tpr2g0555 742 CDD WW 21 49 IPR001202 GO:0005515
Tpr2g0555 742 MobiDBLite consensus disorder prediction 591 742 - -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 638 653 - -
Tpr2g0555 742 CDD SF2_C_DEAD 376 505 - -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 530 579 - -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 686 700 - -
Tpr2g0555 742 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 86 614 - -
Tpr2g0555 742 SMART helicmild6 416 496 IPR001650 -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 47 115 - -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 1 26 - -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 88 115 - -
Tpr2g0555 742 Gene3D - 16 65 - -
Tpr2g0555 742 SMART ww_5 19 52 IPR001202 GO:0005515
Tpr2g0555 742 ProSiteProfiles WW/rsp5/WWP domain profile. 18 52 IPR001202 GO:0005515
Tpr2g0555 742 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Tpr2g0555 742 MobiDBLite consensus disorder prediction 605 635 - -
Tpr2g0555 742 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 614 - -
Tpr2g0555 742 SMART ultradead3 176 379 IPR014001 -
Tpr2g0555 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 535 IPR001650 -
Tpr2g0555 742 Pfam DEAD/DEAH box helicase 181 350 IPR011545 GO:0003676|GO:0005524
Tpr2g0555 742 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 308 316 IPR000629 -
Tpr2g0555 742 Gene3D - 367 537 IPR027417 -
Tpr2g0555 742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 362 IPR014001 -
Tpr2g0555 742 MobiDBLite consensus disorder prediction 47 79 - -
Tpr2g0555 742 Gene3D - 134 366 IPR027417 -
Tpr2g0555 742 SUPERFAMILY WW domain 12 51 IPR036020 GO:0005515
Tpr2g0555 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 512 IPR027417 -
Tpr2g0555 742 ProSitePatterns WW/rsp5/WWP domain signature. 24 50 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0555 Tpr-Chr2 6240934 6246369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0555 155 534 Eukaryotic Initiation Factors Gene Family AT3G19760 33.420 9.56e-64 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0555 K12823 - gmx:100816455 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0555 2 6240934 6246369 Tpr2g0555 2 6240934 6246369 ECH