Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g0549 ATGGACAAAAAACCGTGCAACTCATCTCAAGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATTTTAATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTGCTGGTCTTAAACGTACAGGAAAGAGTTGCAGACTTCGATGGTTAAACTACCTTCGTCCCGATGTTAGAAGAGGGAATATTACACCTGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCTGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACAAGGATACAAAAGCACATTAAACAAGTTGATAATCCTAATCAACAAAATTATCAACCACAAATGAGTTTAGACATAAATGATCATCACCATTCAAGTAGTAGTCAAGTTTCCAACATTGTAGAGCCAATGGAAACTTACTCTCCAACTTCATATCATCAACAAGGAACTTTGGAACCATTTCCAACTCAATTTCCAATAATCAATGATCATCAATCAAGTTGTTGTACTAATGACAACAATACCAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAATTACTCAATGGAGATTAA 636 0.3711 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDNPNQQNYQPQMSLDINDHHHSSSSQVSNIVEPMETYSPTSYHQQGTLEPFPTQFPIINDHQSSCCTNDNNTNNYWSMEDIWSMQLLNGD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g0549 211 SMART sant 68 116 IPR001005 -
Tpr2g0549 211 SMART sant 15 65 IPR001005 -
Tpr2g0549 211 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 208 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr2g0549 211 CDD SANT 73 112 IPR001005 -
Tpr2g0549 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Tpr2g0549 211 Gene3D - 73 143 - -
Tpr2g0549 211 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Tpr2g0549 211 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Tpr2g0549 211 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 208 - -
Tpr2g0549 211 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Tpr2g0549 211 Gene3D - 16 68 - -
Tpr2g0549 211 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Tpr2g0549 211 CDD SANT 18 63 IPR001005 -
Tpr2g0549 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Tpr2g0549 211 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g0549 Tpr-Chr2 6165430 6170096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g0549 4 211 MYB Transcription Factor Family AT3G01530 59.070 2.64e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr2g0549 Myb_DNA-binding 7.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g0549 K09422 - gmx:778048 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g0549 2 6165430 6170096 Tpr2g0549 2 6165430 6170096 ECH